View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_3 (Length: 554)
Name: NF6653_low_3
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Complemental strand, 47820387 - 47819846
Alignment:
| Q |
10 |
acatcatcaaattagcacaaccgcgagagacagtccctcggattctaacaccactcatagaacatacacggagacattgccattatctccaacgaccacc |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47820387 |
acatcctcaaattagcacaaccgcgagagacagtcccttggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccacc |
47820288 |
T |
|
| Q |
110 |
accaagtaaccaccttaatatcctccacaatatccaccacctccggattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47820287 |
accaagtaaccaccttaatatcctccacaatatccaccaccaa---attccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgt |
47820191 |
T |
|
| Q |
210 |
cgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactcccataagacaaataaatttggcgggattacaata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47820190 |
cgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactcccataagataaataaatttggcgggattacaata |
47820091 |
T |
|
| Q |
310 |
aaactctcccaccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaagatgaattgacgattcctcccctctcccgcacaagg |
409 |
Q |
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| T |
47820090 |
aaactctcccaccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaggatgaattgacgattcctcccctctcccgcacaagg |
47819991 |
T |
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| Q |
410 |
ttcacaaatgtgaagcatccgtgggcaagacattcctaaccaatagattaacccttgttgggatacgatcgtaaagaagcttccaagagaacgctacgac |
509 |
Q |
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| T |
47819990 |
tacacaaatgtgaagcatccgtgggcaagacattcctaaccaatagattaacccttgttgggatacgatcgtaaagaagcttccaagagaacgctacaac |
47819891 |
T |
|
| Q |
510 |
cttggaaggtgccggacttttccaaagctcggcaaagacaccttt |
554 |
Q |
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| T |
47819890 |
cttggaaggtgccggacttttccaaagcttggcaaagacaccttt |
47819846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 533
Target Start/End: Complemental strand, 28571663 - 28571413
Alignment:
| Q |
283 |
acaaataaatttggcgggattacaataaaactctcccaccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaagatgaattg |
382 |
Q |
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||||||||||| ||||| |||| | || ||||||||||||| ||| || | |||||||||| || || || || |||||||| ||||| ||| ||| |
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| T |
28571663 |
acaaataaattaggcggaattaagagaatcctctcccaccaccgcataataccttgccacaccctacctgctacatcacaatgaaggaaaaggtgagttg |
28571564 |
T |
|
| Q |
383 |
acgattcctcccctctcccgcacaaggttcacaaatgtgaagcatccgtgggcaagacattcctaaccaatagattaacccttgttgggatacgatcgta |
482 |
Q |
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| T |
28571563 |
aggattcatccaccctttcacataaagctcacaaccgagaagcctccatgggtaagacattcctaaccgcgagattaacctttgttggaattctatcata |
28571464 |
T |
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| Q |
483 |
aagaagcttccaagagaacgctacgaccttggaaggtgccggacttttcca |
533 |
Q |
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| T |
28571463 |
aaggagcttccatgagaaagccaccaccctcgaaggtgccggacttttcca |
28571413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 37035725 - 37035347
Alignment:
| Q |
21 |
ttagcacaaccgcgagagacagtccctcggattctaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaacc |
120 |
Q |
| |
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||||||||| ||||| || || |||||||||| | |||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||||| | |
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| T |
37035725 |
ttagcacaatcgcgaaaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaat |
37035626 |
T |
|
| Q |
121 |
accttaatatcctccacaatatccaccacctccggattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
37035625 |
accttaatatcctccacaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaa |
37035526 |
T |
|
| Q |
221 |
ttaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactcccataagacaaataaatttggcgggattacaataaaactctccca |
320 |
Q |
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|||||||||||||| ||||||||| ||| |||||||||| || | ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
37035525 |
ttaatcttaacccctgacgaatacgcttaatcctctccccgccactccaacactcccataagacaaataaattaggcggaattacaataaacctctccca |
37035426 |
T |
|
| Q |
321 |
ccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaagatgaattgacgattcctcccctctc |
399 |
Q |
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| T |
37035425 |
ccaccccataatatcacgccacacccttccggcaacctcacaatggagaaaaagatgagttgacgattcatccactctc |
37035347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 535
Target Start/End: Complemental strand, 1611288 - 1611239
Alignment:
| Q |
486 |
aagcttccaagagaacgctacgaccttggaaggtgccggacttttccaaa |
535 |
Q |
| |
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||||||||||||||| || || || ||||| ||||||||||||||||||| |
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| T |
1611288 |
aagcttccaagagaaggccaccactttggacggtgccggacttttccaaa |
1611239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 43 - 533
Target Start/End: Original strand, 12825341 - 12825832
Alignment:
| Q |
43 |
tccctcggattctaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaatat |
142 |
Q |
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|||||||||||| ||||||| ||||| ||||||| |||| ||| | ||| | ||||||||||||| |||||| | |||||| | ||| ||||| || | |
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| T |
12825341 |
tccctcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacacctttacatcatccaccattt |
12825440 |
T |
|
| Q |
143 |
ccaccacctccggattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaat |
242 |
Q |
| |
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| ||||| | | ||||||||||| || ||||| |||||||| |||||||| |||||| || |||| | ||||| ||| | |||||| || ||| || |
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| T |
12825441 |
catccaccgctgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaactcgtagaatgccgaataagtcttaaaccattacggat |
12825540 |
T |
|
| Q |
243 |
actcttcttcctctccccaccgcaccaacactcccataagacaaataaatttggcgggattacaataaaac-tctcccaccaccccatcatgtcac---g |
338 |
Q |
| |
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| ||| |||||||| ||||| |||||||||||||| | || |||||||| ||||| |||| ||| |||| | ||||| |||||| ||| ||| | |
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| T |
12825541 |
tcgcttattcctctctccaccacaccaacactcccaaagaacgaataaattaggcggaatta-aatgaaacttatcccatcacccc--cattacaccttg |
12825637 |
T |
|
| Q |
339 |
ccacacccttccggcaacttcgcaatgaagaaaaagatgaattgacgattcctcccctctcccgcacaaggttcacaaatgtgaagcatccgtgggcaag |
438 |
Q |
| |
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||| |||||| ||||||| || ||||||||||| ||||||||||||||||| ||| | || | || ||||| || | || | ||||||||| || || |
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| T |
12825638 |
ccaaacccttacggcaacctcacaatgaagaaatagatgaattgacgattcatccaccgtctcacaaaaggtacaacactgaggagcatccgttggtaat |
12825737 |
T |
|
| Q |
439 |
acattcctaaccaatagattaacccttgttgggatacgatcgtaaagaagcttccaagagaacgctacgaccttggaaggtgccggacttttcca |
533 |
Q |
| |
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|||||| | | | | ||||| |||||||| | || ||||| || || ||||||||||| |||||||| ||||| ||||||| ||| || ||||| |
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| T |
12825738 |
acattcatcatcgaaagattcacccttgtagatattcgatcatataggagcttccaagaaaacgctacaaccttcgaaggtgtcgggctcttcca |
12825832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 180 - 383
Target Start/End: Original strand, 42748870 - 42749073
Alignment:
| Q |
180 |
attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactcccat |
279 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||| | ||||| || | |||| | ||||| ||||||||||| |||| |||||||||||| |
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| T |
42748870 |
attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa |
42748969 |
T |
|
| Q |
280 |
aagacaaataaatttggcgggattacaataaaactctcccaccaccccatcatgtcacgccacacccttccggcaacttcgcaatgaagaaaaagatgaa |
379 |
Q |
| |
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| | || || || || || |||| || | ||||||||||||||||| | | ||||||| || |||||||| || ||||||||||||||||||| |
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| T |
42748970 |
agaatgaagaagttagggggaattaacatcatcctctcccaccaccccataacaccctgccacactctaccggcaacctcacaatgaagaaaaagatgaa |
42749069 |
T |
|
| Q |
380 |
ttga |
383 |
Q |
| |
|
|||| |
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| T |
42749070 |
ttga |
42749073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 34774684 - 34774782
Alignment:
| Q |
180 |
attcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactcttcttcctctccccaccgcaccaacactccca |
278 |
Q |
| |
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|||||||||||||||||| ||||||||||| | ||||||||| | ||||| || |||| | ||||| ||||||||||| ||||||||||||||||| |
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| T |
34774684 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactccca |
34774782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 535
Target Start/End: Complemental strand, 15858193 - 15858141
Alignment:
| Q |
483 |
aagaagcttccaagagaacgctacgaccttggaaggtgccggacttttccaaa |
535 |
Q |
| |
|
|||||||||||||||||| || || || || || ||||||||||||||||||| |
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|
| T |
15858193 |
aagaagcttccaagagaatgccacaactttagacggtgccggacttttccaaa |
15858141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 533
Target Start/End: Complemental strand, 10500694 - 10500650
Alignment:
| Q |
489 |
cttccaagagaacgctacgaccttggaaggtgccggacttttcca |
533 |
Q |
| |
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|||||||||||| ||||| ||||||||||| ||||| |||||||| |
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| T |
10500694 |
cttccaagagaaggctactaccttggaaggagccgggcttttcca |
10500650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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