View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_32 (Length: 217)
Name: NF6653_low_32
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 7138423 - 7138226
Alignment:
| Q |
5 |
ggccttatatttgcatatgttatttaaaattaaccttctcgcttttaaaattgctcatttacgcccaaaatttatcctaataacctcaatgcaagttaat |
104 |
Q |
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| T |
7138423 |
ggccttatatttgcatatgttatttaaaattaatcttctcacttttaaaattgctcatttacacctaaaatttatcctaataaccccaatgcaagttaat |
7138324 |
T |
|
| Q |
105 |
tgtcactcgctataaatggcaattaactcacgctcgatacttatgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctccccaatatt |
202 |
Q |
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| T |
7138323 |
tgtcactcgctacaaatggcaattaactcaagctcggtacttatgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctcaccaatatt |
7138226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 5090814 - 5090627
Alignment:
| Q |
11 |
atatttgcatatgttatttaaaattaaccttctcgcttttaaaattgctcatttacgcccaaaatttatcctaataacctcaatgcaagttaattgtcac |
110 |
Q |
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| T |
5090814 |
atatttgcatatgttattcaatattacccttctcacttttaaaattgctcatttacccccaaaatttaccctaataacccaaatgcaagttaattgtcgc |
5090715 |
T |
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| Q |
111 |
tcgctataaatggcaattaactcacgctcgatacttatgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctccccaatatt |
202 |
Q |
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| T |
5090714 |
tcgctacaaacggaagctaactcgcgctcggttcctatgcttacgttttatttgattatttgac----ataaaattgtgcctcaccaatatt |
5090627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41881117 - 41880916
Alignment:
| Q |
1 |
gcttggccttatatttgcatatgttatttaaaattaaccttctcgcttttaaaattgctcatttacgcccaaaatttatcctaataacctcaatgcaagt |
100 |
Q |
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|||||||||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
41881117 |
gcttggccttatatctgcacatgttatttaaaattaatcttctcacttttaaaattgctcatttacacccaaaatttatcctaataaccccaatgcaagt |
41881018 |
T |
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| Q |
101 |
taattgtcactcgctataaatggcaattaactcacgctcgatacttatgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctccccaata |
200 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41881017 |
taattatcactcgctacaaatggcaattaactcacgctcggtacttatgtgtatattttatttaattatttgaccgcgaaaaaattgtgtctccccaata |
41880918 |
T |
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| Q |
201 |
tt |
202 |
Q |
| |
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|| |
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| T |
41880917 |
tt |
41880916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 26442875 - 26443072
Alignment:
| Q |
5 |
ggccttatatttgcatatgttatttaaaattaaccttctcgcttttaaaattgctcatttacgcccaaaatttatcctaataacctcaatgcaagttaat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||| |||||||| ||||| |
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| T |
26442875 |
ggccttatatttgcatatgttatttaaaattaatcttctcacttttaaaattgctcatttacaccaaaaatttatcctaataaccccaatgcaaattaat |
26442974 |
T |
|
| Q |
105 |
tgtcactcgctataaatggcaattaactcacgctcgatacttatgtgtacgttttatttaattatttgaccgcgaaaaaattgtgcctccccaatatt |
202 |
Q |
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|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| |
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| T |
26442975 |
tgtcactcgctacaaatgacaattaactcacgctcggtacttatgtgtacgttttatttaattatttgaccgcaaaaaaattgttcctcactaatatt |
26443072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 53223550 - 53223621
Alignment:
| Q |
49 |
ttaaaattgctcatttacgcccaaaatttatcctaataacctcaatgcaagttaattgtcactcgctataaa |
120 |
Q |
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||||||||| |||||||| || |||||||| |||||||||| | ||||||||||| ||| ||||||||||| |
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| T |
53223550 |
ttaaaattgatcatttacaccaaaaatttaccctaataaccctagtgcaagttaatcgtcgctcgctataaa |
53223621 |
T |
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