View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6653_low_4 (Length: 552)

Name: NF6653_low_4
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6653_low_4
NF6653_low_4
[»] chr8 (2 HSPs)
chr8 (16-390)||(44631008-44631388)
chr8 (416-494)||(44631439-44631516)
[»] chr7 (4 HSPs)
chr7 (55-390)||(36973735-36974067)
chr7 (19-118)||(36974092-36974190)
chr7 (421-494)||(36973600-36973673)
chr7 (55-118)||(36974048-36974111)
[»] chr6 (4 HSPs)
chr6 (126-290)||(7024514-7024680)
chr6 (440-494)||(7024262-7024317)
chr6 (324-385)||(7024401-7024462)
chr6 (33-98)||(7024663-7024727)
[»] chr2 (2 HSPs)
chr2 (444-495)||(13308840-13308891)
chr2 (444-494)||(10657127-10657177)
[»] chr4 (1 HSPs)
chr4 (493-536)||(14054272-14054317)
[»] chr1 (2 HSPs)
chr1 (448-486)||(9899384-9899422)
chr1 (403-494)||(12551173-12551263)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 44631008 - 44631388
Alignment:
Q  16 ctgtggtggggggtgatggagaagaccttataaggaaaagttggaagcaagagacataattttttgttgagaatggatgccttgttggaagcaagagaca 115  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  44631008 ctgtggtggagggtgatggagaagatcttataaggaaaagttggaagcaagagacatgattttttgttgtgaatggatgccttgttggaagcaagagaca 44631107  T
Q  116 tgannnnnnngttgtgaatgcatgccttcctattttaaatttagatgtatcttatattaagtaatatgacc-gtccacttttgtggttttgctacta-at 213  Q
    |||       |||||||||| |||||||| |||||| |||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||| ||    
T  44631108 tgatttttt-gttgtgaatggatgccttcttattttgaatttagatgtatcttatattaagcaacatgacttgtccacttttgtggttttgctactagat 44631206  T
Q  214 tatgacttaattctctactgctactagtaatgtgactgtatcaagtaatgcaacttcttttattaattctctttgttatctattaatatctattagctct 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||    
T  44631207 tatgacttaattctctcctgctactagtaatgtgactgtatcaagtaatgcaacttcttctattatttctctttgttatctattaatatctattagatct 44631306  T
Q  314 ctttagccta-----tgtatgtgtttagctattttccattatcttgaccaagatagggactgtacagagcttaaattagcaa 390  Q
    ||||||||||     || ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  44631307 ctttagcctaaaatatgcatgtgtttagctattttccattatcttgaccaagaaatggactgtatagagcttaaattagcaa 44631388  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 44631439 - 44631516
Alignment:
Q  416 ggacagggaatggattcaccagcagggtggggatcggggaagtatcccccgcccccgatccgccccattgacatcccta 494  Q
    |||| ||||||||||||||| ||   | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44631439 ggacggggaatggattcaccggcgaagcggggatcggggaagtatcccc-gcccccgatccgccccattgacatcccta 44631516  T

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Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 55 - 390
Target Start/End: Complemental strand, 36974067 - 36973735
Alignment:
Q  55 gttggaagcaagagacataattttttgttgagaatggatgccttgttggaagcaagagacatgannnnnnngttgtgaatgcatgccttcctattttaaa 154  Q
    |||||||||||||| ||| ||||||||||| |||| |||| |||||||||||||||||||||||       |||||||||  ||||||||||||||| ||    
T  36974067 gttggaagcaagaggcatgattttttgttgtgaatagatgtcttgttggaagcaagagacatgatttttt-gttgtgaatagatgccttcctattttgaa 36973969  T
Q  155 tttagatgtatcttatattaagtaatatgac-cgtccacttttgtggttttgctacta-attatgacttaattctctactgctactagtaatgtgactgt 252  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36973968 tttagatgtatcttatattaagtaatgtgacttgtccacttttgtggttttgctactagattatgacttaattctctactgctactagtaatgtgactgt 36973869  T
Q  253 atcaagtaatgcaacttcttttattaattctctttgttatctattaatatctattagctctctttagccta---tgtatgtgtttagctattttccatta 349  Q
    ||       ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||   | ||| |||||||| |||||||||||    
T  36973868 at------ttgcaacttcttctattaattctctttgttatctattaatat-tattagatctctttagcctagggtatatatgtttagcaattttccatta 36973776  T
Q  350 tcttgaccaagatagggactgtacagagcttaaattagcaa 390  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  36973775 tcttgaccaagaaagggactgtacagagcttaaattagcaa 36973735  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 36974190 - 36974092
Alignment:
Q  19 tggtggggggtgatggagaagaccttataaggaaaagttggaagcaagagacataattttttgttgagaatggatgccttgttggaagcaagagacatga 118  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  36974190 tggtggagggtgatggagaagatcttataaggaaaagttggaagca-gagacatgattttttgttgtgaatggatgccttgttggaagcaagagacatga 36974092  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 36973673 - 36973600
Alignment:
Q  421 gggaatggattcaccagcagggtggggatcggggaagtatcccccgcccccgatccgccccattgacatcccta 494  Q
    ||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  36973673 gggaatggattcaccggcggggcggggatcagggaagtatcccccgcccccgatccaccccattgacgtcccta 36973600  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 36974111 - 36974048
Alignment:
Q  55 gttggaagcaagagacataattttttgttgagaatggatgccttgttggaagcaagagacatga 118  Q
    |||||||||||||||||| ||||||||||| || | |||| ||||||||||||||||| |||||    
T  36974111 gttggaagcaagagacatgattttttgttgtgattagatgtcttgttggaagcaagaggcatga 36974048  T

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Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 7024680 - 7024514
Alignment:
Q  126 gttgtgaatgcatgccttcctattttaaatttagatgtatcttatattaagtaatatgacc-gtccacttttgtggttttgctacta-attatgacttaa 223  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||    
T  7024680 gttgtgaatgaatgccttcctattttgaatttaaatgtaacttatattaagtaatgtgacttgtccacttttgtggttttgctactagattatgacttaa 7024581  T
Q  224 ttctctactgctactagtaatgtgactgtatcaagtaatgcaacttcttttattaattctctttgtt 290  Q
    ||||||  ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||    
T  7024580 ttctcttttgctactagtaatgtgactgtattaagtaatgcaactttttctattaattctctttgtt 7024514  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 7024317 - 7024262
Alignment:
Q  440 gggtggggatcggggaagtatcccc-cgcccccgatccgccccattgacatcccta 494  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  7024317 gggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatcccta 7024262  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 7024462 - 7024401
Alignment:
Q  324 tgtatgtgtttagctattttccattatcttgaccaagatagggactgtacagagcttaaatt 385  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||    
T  7024462 tgtatgtgtttagctatttttcattatcttgaccaagaaaggaactgtacagtgctttaatt 7024401  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 7024727 - 7024663
Alignment:
Q  33 ggagaagaccttataaggaaaagttggaagcaagagacataattttttgttgagaatggatgcctt 98  Q
    |||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  7024727 ggagaagatcttataaggaaaagttggaagc-agagacatgattttttgttgtgaatgaatgcctt 7024663  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 13308891 - 13308840
Alignment:
Q  444 ggggatcggggaagtatcccccgcccccgatccgccccattgacatccctag 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308891 ggggatcggggaagtatcccccgcccccgatccgccccattgacatccctag 13308840  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 10657177 - 10657127
Alignment:
Q  444 ggggatcggggaagtatcccccgcccccgatccgccccattgacatcccta 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10657177 ggggatcggggaagtatcccccgcccccgatccgccccattgacatcccta 10657127  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 14054272 - 14054317
Alignment:
Q  493 tagaagctagaaatccaagctt--gcggcaaagcaaacgcggttac 536  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||    
T  14054272 tagaagctagaaatccaagcttttgcggcaaagcaaacgcggttac 14054317  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 9899384 - 9899422
Alignment:
Q  448 atcggggaagtatcccccgcccccgatccgccccattga 486  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  9899384 atcggggaagtatcccctgcccccgatccgccccattga 9899422  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 12551173 - 12551263
Alignment:
Q  403 tggggatccgcgaggacagggaatggattcaccagcagggtggggatcggggaagtatcccccgcccccgatccgccccattgacatcccta 494  Q
    |||||||||||| |||  ||||| | |||||||| | ||| | |||| |||||||| ||||||| |||||||| |||| |||||||||||||    
T  12551173 tggggatccgcggggatggggaacgaattcaccaacggggcgaggattggggaagt-tcccccgtccccgatctgccctattgacatcccta 12551263  T

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