View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_5 (Length: 540)
Name: NF6653_low_5
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 524
Target Start/End: Original strand, 2717731 - 2718252
Alignment:
| Q |
5 |
acatcatcagattattatcgaaatactatagagctatgtacggacacaggcacacatgtagatactggtaataatttgataaaattgaaacgattgaatg |
104 |
Q |
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| T |
2717731 |
acatcataaggttattatcgaaatactatagagctacgcacggacacaggcacacatgtagatactggtaataatttgataaaattgaaacgattgaatg |
2717830 |
T |
|
| Q |
105 |
taatcacatgtgttgatgttgtttcatatcgaacactaacatgtgtcgtacacgagacgatccttcaatttcaagtatggatgctaaa--gtgagaatgc |
202 |
Q |
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| T |
2717831 |
taatcacatgtgttgatgttgtttcatatcgaacactaacatgtgtcttacacga--cgatccttcaatttcaagtatggatgctaaaaggtgagaatgc |
2717928 |
T |
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| Q |
203 |
aaacttacatttggaagtggaagtgattcaaggagctgatatgagctgcaaaaatgaaaccaagcttaaattttttattatgtgtgtctcatagattaga |
302 |
Q |
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| T |
2717929 |
aaacttacatttggaagtggaagtgattcaaggagctgatatgagctgcaaaaataaaaccaagcttaaattttttattatgtgtgtttcatagattaga |
2718028 |
T |
|
| Q |
303 |
atataaatgaagataacaaacatcaattaggaaaacacatattttcttgataaaaatcaatagattaaaatgaccttactcaatggtaatttttgtgact |
402 |
Q |
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| T |
2718029 |
atataaatgaagataacaaacatcaattaggaaaacacatattttcttgataaaaatcaatagattaaaatgaccttactcaatggtaatttttgtgact |
2718128 |
T |
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| Q |
403 |
attaa-nnnnnnnctattgatataattattcttctgtcaatttaaaagtcatgtcaagtactgtact-nnnnnnngtcatgtcaagttactcaatttagt |
500 |
Q |
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| T |
2718129 |
attaattttttttctattcatataattattcttctgtcaatttaaaaggcatgtcaagtactgtactaaaaaaaagtcatgtcaagttactcaatttagt |
2718228 |
T |
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| Q |
501 |
agaaaaactaagttatcatgtggt |
524 |
Q |
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| T |
2718229 |
agaaaaactaagttataatgtggt |
2718252 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 36895368 - 36895415
Alignment:
| Q |
72 |
gtaataatttgataaaattgaaacgattgaatgtaatcacatgtgttg |
119 |
Q |
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| T |
36895368 |
gtaataatttgataaaatataagtgattgaatgtaatcacatgtgttg |
36895415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 18262835 - 18262791
Alignment:
| Q |
73 |
taataatttgataaaattgaaacgattgaatgtaatcacatgtgt |
117 |
Q |
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| T |
18262835 |
taataatttgataaaattgaattaattgaaagtaatcacatgtgt |
18262791 |
T |
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