View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6653_low_6 (Length: 537)
Name: NF6653_low_6
Description: NF6653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6653_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 47807112 - 47807626
Alignment:
| Q |
1 |
tatctacctaaagcgaagcttggtattcgagttatctaaacagcctgaaagctttgtgagtagagtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
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| T |
47807112 |
tatctacctaaagcgaagcttggtattcgagttatcgaaacagcctgaaagctttgcgagtagggtgattggaacttttgttagagccagagtagattcc |
47807211 |
T |
|
| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacactactttaaattta |
200 |
Q |
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| T |
47807212 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctacttta------ |
47807305 |
T |
|
| Q |
201 |
tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaata |
300 |
Q |
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| T |
47807306 |
tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaata |
47807405 |
T |
|
| Q |
301 |
ctcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactata |
400 |
Q |
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| T |
47807406 |
ctcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactata |
47807505 |
T |
|
| Q |
401 |
ttttcctggaatacatattaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgt |
500 |
Q |
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| T |
47807506 |
ttttcctggaatacatattaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaatactggcttgtttccgaaaataactgt |
47807605 |
T |
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| Q |
501 |
tgtaagttgtatgatacatgt |
521 |
Q |
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| T |
47807606 |
tgtaagttgtatgatacatgt |
47807626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 47804550 - 47805063
Alignment:
| Q |
1 |
tatctacctaaagcgaagcttggtattcgagttatctaaacagcctgaaagctttgtgagtagagtggttggaacttttgttagagccagagtagattcc |
100 |
Q |
| |
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|||||||||||| | ||||||||| |||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47804550 |
tatctacctaaaacaaagcttggtgatcgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagccagagtagattcc |
47804649 |
T |
|
| Q |
101 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacactactttaaattta |
200 |
Q |
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| T |
47804650 |
aatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgctacttta------ |
47804743 |
T |
|
| Q |
201 |
tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47804744 |
tatttctcaatatttggttctatgtatgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatcaaatgtctaatggaata |
47804843 |
T |
|
| Q |
301 |
ctcttgcaagtttccttcatgcctaaagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaacta-t |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||| || | |
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| T |
47804844 |
ctcttgcaagtttccttcatgcctaaagctatttccatctctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatatt |
47804943 |
T |
|
| Q |
400 |
attttcctggaatacatattaattgtcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactg |
499 |
Q |
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||| ||||||||||| |||||||||| |||||||||| ||||||||| || |||||||| ||| |||||||||| ||||| ||| | || ||| |||||| |
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| T |
47804944 |
attatcctggaatacgtattaattgtgttgttttacttacagcaagattgtgaggatttacggaaaaaagtgaaaactggattgctcccaaaattaactg |
47805043 |
T |
|
| Q |
500 |
ttgtaagttgtatgatacat |
519 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47805044 |
ttgtaagttgtatgatacat |
47805063 |
T |
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Back To:
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