View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6654_low_1 (Length: 503)

Name: NF6654_low_1
Description: NF6654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6654_low_1
NF6654_low_1
[»] chr4 (9 HSPs)
chr4 (256-493)||(21800970-21801207)
chr4 (260-484)||(45892962-45893182)
chr4 (260-450)||(48665477-48665663)
chr4 (3-134)||(21800718-21800848)
chr4 (335-484)||(12583525-12583673)
chr4 (260-440)||(49421029-49421208)
chr4 (94-128)||(14269596-14269630)
chr4 (97-134)||(45893309-45893346)
chr4 (100-134)||(49421305-49421339)
[»] chr7 (12 HSPs)
chr7 (260-484)||(23773068-23773288)
chr7 (313-484)||(26469940-26470112)
chr7 (313-484)||(26546380-26546552)
chr7 (262-467)||(11275814-11276006)
chr7 (258-368)||(22859647-22859752)
chr7 (256-318)||(26469812-26469869)
chr7 (256-318)||(26546284-26546341)
chr7 (290-363)||(12119548-12119621)
chr7 (96-134)||(26469657-26469695)
chr7 (96-134)||(26546129-26546167)
chr7 (94-124)||(46463667-46463697)
chr7 (260-321)||(33435765-33435822)
[»] scaffold0219 (1 HSPs)
scaffold0219 (259-480)||(6216-6433)
[»] chr3 (2 HSPs)
chr3 (256-484)||(6000194-6000418)
chr3 (96-126)||(11217966-11217996)
[»] chr2 (5 HSPs)
chr2 (256-484)||(36658048-36658272)
chr2 (94-134)||(29463343-29463383)
chr2 (97-134)||(36657891-36657928)
chr2 (292-346)||(20361543-20361597)
chr2 (292-353)||(20429347-20429409)
[»] chr6 (2 HSPs)
chr6 (260-481)||(23660945-23661162)
chr6 (97-134)||(23660778-23660815)
[»] scaffold0527 (2 HSPs)
scaffold0527 (260-488)||(3599-3818)
scaffold0527 (312-488)||(11662-11834)
[»] chr8 (2 HSPs)
chr8 (260-476)||(923420-923630)
chr8 (291-334)||(42773176-42773219)
[»] chr1 (2 HSPs)
chr1 (267-451)||(16180807-16180990)
chr1 (290-355)||(9004840-9004906)
[»] chr5 (2 HSPs)
chr5 (291-467)||(32538367-32538546)
chr5 (97-125)||(30739538-30739566)
[»] scaffold0445 (1 HSPs)
scaffold0445 (97-134)||(7122-7159)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 256 - 493
Target Start/End: Original strand, 21800970 - 21801207
Alignment:
Q  256 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttat 355  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21800970 gccacaatgatgataaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatgaaaatatatttat 21801069  T
Q  356 gggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 455  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801070 gggtttcagatcaccgttgattaagcgccgcaacagctgtcctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 21801169  T
Q  456 cgttgtcttgtagagatctggtgttgacgtgatgatgt 493  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  21801170 cgttgtcttgtagagatctggtgttgacgtgattatgt 21801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 260 - 484
Target Start/End: Complemental strand, 45893182 - 45892962
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 358  Q
    |||||||||||||||||||||||||||||     | |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||    
T  45893182 caatgatgacaaatatgtgtcacatgttt-----tcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatagg 45893088  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 458  Q
    |||||||||  ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||  ||| ||    
T  45893087 tttcagatcgtcgttgatgaagcgccgccacggctgtccttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaacatcgttgt 45892988  T
Q  459 tgtcttgtagagatctggtgttgacg 484  Q
    |||||| ||||| | |||||||||||    
T  45892987 tgtcttatagagctatggtgttgacg 45892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 260 - 450
Target Start/End: Original strand, 48665477 - 48665663
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaata-tatttatggg 358  Q
    |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  48665477 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatggg 48665571  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 450  Q
    ||| |||||  ||| ||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  48665572 ttttagatcgtcgtcgatgaagcgccgcagcggctgtcctttcagagtctttttgtgtgttgattctattgtggttgctggtttcgttcaac 48665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 21800718 - 21800848
Alignment:
Q  3 gatgtcgaagaatattcacctcgaacttggagtgtacaannnnnnnnnaattaacaacttattaaataatatatttattacttgcatgtactatactagt 102  Q
    |||| |||| |||||||||||||||||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21800718 gatgccgaataatattcacctcgaacttggagtgtacaatttttttt-aattaacaacttattgaataatatatttattacttgcatgtactatactagt 21800816  T
Q  103 gtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||||||||||||||||||||||||||||    
T  21800817 gtgttaacccgtgcaatgcacgggtgatagac 21800848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 12583673 - 12583525
Alignment:
Q  335 tataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggt 433  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| ||||||| || | |||||||||||| |||| ||||||||  ||||| |||||| ||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatgaagcgcctcagcgactgtcctttcatagtcatggtgtgt--tgattatattgtcgt 12583576  T
Q  434 cactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 484  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  12583575 cactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacg 12583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 440
Target Start/End: Complemental strand, 49421208 - 49421029
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 358  Q
    ||||||||| ||||| ||||| ||| |||  |||||||||||||||||| |||| ||||||| ||| |||||||| ||||| | |||||||||||||| |    
T  49421208 caatgatgataaatacgtgtctcatattt--tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttatgag 49421111  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggt 440  Q
    ||| | |||| ||| | | |||||||||  | |||||||| ||| ||||||| |||  ||||||||| |||| |||||||||    
T  49421110 ttttatatcatcgtcggtgaagcgccgccccgactgtcctctcacagtcttgatgtaagttgattctgttgttgtcactggt 49421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 14269630 - 14269596
Alignment:
Q  94 tatactagtgtgttaacccgtgcaatgcacgggtg 128  Q
    |||||||||||||||||||||||||||||||||||    
T  14269630 tatactagtgtgttaacccgtgcaatgcacgggtg 14269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 45893346 - 45893309
Alignment:
Q  97 actagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45893346 actagtgtgttaacccgtgcaatgcgcgggtgatagac 45893309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 134
Target Start/End: Complemental strand, 49421339 - 49421305
Alignment:
Q  100 agtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    |||||||||||||| ||||||||||||||||||||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagac 49421305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 260 - 484
Target Start/End: Original strand, 23773068 - 23773288
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 358  Q
    |||||||||||||||||||||||| |     ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |    
T  23773068 caatgatgacaaatatgtgtcacagg-----tttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgag 23773162  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 458  Q
    |||||||||  ||| ||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  23773163 tttcagatcgtcgtcgatgaagcgccgcagcggctatcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaacatcgtcgt 23773262  T
Q  459 tgtcttgtagagatctggtgttgacg 484  Q
    ||| |||||||| | |||||||||||    
T  23773263 tgtattgtagagctatggtgttgacg 23773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 484
Target Start/End: Original strand, 26469940 - 26470112
Alignment:
Q  313 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 411  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26470039  T
Q  412 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 484  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26470040 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 313 - 484
Target Start/End: Original strand, 26546380 - 26546552
Alignment:
Q  313 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 411  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26546479  T
Q  412 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 484  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26546480 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 467
Target Start/End: Original strand, 11275814 - 11276006
Alignment:
Q  262 atgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtt 360  Q
    ||||||||||||||||||| ||| | |    |||| ||||||||||| ||||||||||||| || |||||||| ||||| ||||| |||||||| || ||    
T  11275814 atgatgacaaatatgtgtctcatatct----tttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatt 11275908  T
Q  361 tcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttg 460  Q
    |||||||  ||         ||| ||  |||||||||| ||| |||||||||||| ||||||| | |||||||||||| |||||| ||||| ||| ||||    
T  11275909 tcagatcttcg---------cgcagccgcaactgtcctctcacagtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttg 11275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 22859647 - 22859752
Alignment:
Q  258 cacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttt-tatgtataaatgaaaatatatttatg 356  Q
    ||||||||| | |||||||||||||||      ||||||||||||||  || | ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  22859647 cacaatgataataaatatgtgtcacat------tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatgaaaatatatttatg 22859740  T
Q  357 ggtttcagatca 368  Q
    ||||||| ||||    
T  22859741 ggtttcatatca 22859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 26469812 - 26469869
Alignment:
Q  256 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 318  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26469812 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 26546284 - 26546341
Alignment:
Q  256 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 318  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26546284 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 12119548 - 12119621
Alignment:
Q  290 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttca 363  Q
    |||||||||||||||| || |||||||||||| | || ||||||| ||||||| ||||||||||||| |||||||    
T  12119548 ttttttatgtttattattgataaatatatgtcccatg-ttttatgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 26469657 - 26469695
Alignment:
Q  96 tactagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26469657 tactagtgtgttaacccttgcgatgcacgggtgatagac 26469695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 26546129 - 26546167
Alignment:
Q  96 tactagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  26546129 tactagtgtgttaacccttgcgatgcacgggtgatagac 26546167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 46463697 - 46463667
Alignment:
Q  94 tatactagtgtgttaacccgtgcaatgcacg 124  Q
    |||||||||||||||||||||||||||||||    
T  46463697 tatactagtgtgttaacccgtgcaatgcacg 46463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 33435765 - 33435822
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtc 321  Q
    ||||||||||||||||||||| ||    | |||||||| ||| |||||||||||||||||||    
T  33435765 caatgatgacaaatatgtgtccca----tattttttatttttgttagtggtaaatatatgtc 33435822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 259 - 480
Target Start/End: Complemental strand, 6433 - 6216
Alignment:
Q  259 acaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgg 357  Q
    ||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  6433 acaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttacgg 6339  T
Q  358 gtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcg 457  Q
    ||||||||||  |||  || | |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||    
T  6338 gtttcagatcgtcgtcaatgacgcgctgcagcggctgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaacgtagtcg 6239  T
Q  458 ttgtcttgtagagatctggtgtt 480  Q
    ||||||||||||| | |||||||    
T  6238 ttgtcttgtagagttatggtgtt 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 484
Target Start/End: Complemental strand, 6000418 - 6000194
Alignment:
Q  256 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 354  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  6000418 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatattta 6000324  T
Q  355 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 454  Q
    ||||||| || |   ||| ||| |||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||    
T  6000323 tgggttttagtttgtcgtcgatgaagcgccgcagcggctgtccttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcg 6000224  T
Q  455 tcgttgtcttgtagagatctggtgttgacg 484  Q
    |||  ||||||||||| | |||||||||||    
T  6000223 tcgacgtcttgtagagctatggtgttgacg 6000194  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 11217996 - 11217966
Alignment:
Q  96 tactagtgtgttaacccgtgcaatgcacggg 126  Q
    |||||||||||||||||||||||||||||||    
T  11217996 tactagtgtgttaacccgtgcaatgcacggg 11217966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 256 - 484
Target Start/End: Original strand, 36658048 - 36658272
Alignment:
Q  256 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 354  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  36658048 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatattta 36658142  T
Q  355 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 454  Q
    |||||||||||||  | | ||| |||||||||| |  ||||||| | ||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||    
T  36658143 tgggtttcagatcgtcatcgatgaagcgccgcatcggctgtcctgttagagtcttgctttgtgtggattctattgtggtcactggtttcgttcaacgtcg 36658242  T
Q  455 tcgttgtcttgtagagatctggtgttgacg 484  Q
    |  ||||||||||||| | || ||||||||    
T  36658243 ttattgtcttgtagagctatgatgttgacg 36658272  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 29463343 - 29463383
Alignment:
Q  94 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29463343 tatactagtgtgttaacccgtgcaatgcacgggtgatagac 29463383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 36657891 - 36657928
Alignment:
Q  97 actagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36657891 actagtgtgttaacccgtgcaatgcacgggtgatagac 36657928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 20361597 - 20361543
Alignment:
Q  292 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa 346  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| ||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaa 20361543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 20429409 - 20429347
Alignment:
Q  292 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaat-gaaaatatattt 353  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||| | | ||||||||||||    
T  20429409 ttttatgtttattagttataaatatatgtcttgtgtttttatgtatcagtggaaaatatattt 20429347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 260 - 481
Target Start/End: Original strand, 23660945 - 23661162
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 358  Q
    ||||||||| |||||||||||||||||||     |||||||||| |||| ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  23660945 caatgatgagaaatatgtgtcacatgttt-----ttatgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatggg 23661039  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 458  Q
    ||||||| |    |  || |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  23661040 tttcagaccgtgatccatgaagcgccgcagcgcctgtcctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgt 23661139  T
Q  459 tgtcttgtagagatctggtgttg 481  Q
    |||||||||||| | ||||||||    
T  23661140 tgtcttgtagagctatggtgttg 23661162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 23660778 - 23660815
Alignment:
Q  97 actagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  23660778 actagtgcgttaaccggtgcaatgcacgggtgatagac 23660815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 260 - 488
Target Start/End: Complemental strand, 3818 - 3599
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 358  Q
    |||||||||||||||||||||||||||||     |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  3818 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatggg 3724  T
Q  359 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 458  Q
    ||| |||||  ||| ||| ||||||| || |  ||||||||| |||     ||||||||||||||||||||||||  ||||||| |||||| | ||||||    
T  3723 ttttagatcgtcgtcgatgaagcgccacagcggctgtccttttaga-----ggtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgt 3629  T
Q  459 tgtcttgtagagatctggtgttgacgtgat 488  Q
    |||||| ||||| | |||| ||||||||||    
T  3628 tgtcttatagagctatggtattgacgtgat 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 312 - 488
Target Start/End: Complemental strand, 11834 - 11662
Alignment:
Q  312 aatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttg 410  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| ||||         
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttagag----- 11740  T
Q  411 gtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgat 488  Q
    |||||||||||||||||||||||  ||||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  11739 gtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgat 11662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 260 - 476
Target Start/End: Original strand, 923420 - 923630
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttatgggt 359  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||||||||||     
T  923420 caatgatgacaaatatgt-tcacatgttt--tttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatgaaaatatatttatgggg 923516  T
Q  360 ttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgtt 459  Q
    | ||||| | ||| ||| || |||  || || |||||| ||||  ||||||| |||| || |||| |||||||||| | ||||  ||||||| |||||||    
T  923517 tccagat-atcgtcgatgaaccgc--caccacctgtcccttcatcgtcttggcgtgtcttaattccattgtggtcattagtttcattcaacgtcgtcgtt 923613  T
Q  460 gtcttgtagagatctgg 476  Q
    ||| ||||||| |||||    
T  923614 gtcatgtagagctctgg 923630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 334
Target Start/End: Complemental strand, 42773219 - 42773176
Alignment:
Q  291 tttttatgtttattagtggtaaatatatgtcacgtgtttttatg 334  Q
    |||||||||||||||||| |||||||||||| | ||||||||||    
T  42773219 tttttatgtttattagtgataaatatatgtctcatgtttttatg 42773176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 451
Target Start/End: Complemental strand, 16180990 - 16180807
Alignment:
Q  267 gacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcaga 365  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | |  ||||||||||||    
T  16180990 gacaaatatgtgtcacatgttt--tttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcaga 16180893  T
Q  366 tcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 451  Q
    ||  ||| ||| ||||  ||    |  |||||||||| | | |||||||||||||||||  ||||||||||| |||| ||||||||    
T  16180892 tcgtcgtcgatgaagcatcgtcgtaggtgtcctttcacaattttggtgtgtgttgattccgttgtggtcactagtttcgttcaacg 16180807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 9004840 - 9004906
Alignment:
Q  290 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatga-aaatatatttat 355  Q
    |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||    
T  9004840 ttttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatatttat 9004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 467
Target Start/End: Complemental strand, 32538546 - 32538367
Alignment:
Q  291 tttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaa---atatatttatgggtttcagatcaccgttgattaagcgccgca 387  Q
    ||||||||||||||||||   || ||||||| |||||||||||| ||||| ||||   |||| ||| || |||| |||||| ||| | | ||||| |||     
T  32538546 tttttatgtttattagtgaagaacatatgtctcgtgtttttatgcataaaagaaaaatatatttttgtgagttttagatcatcgtcggtgaagcgtcgcc 32538447  T
Q  388 acaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgta 467  Q
     | ||| |||| ||| ||||||||| || ||||||| | || |||||| ||||||  ||||||  |||||||||||||||    
T  32538446 ccgactatcctctcacagtcttggtttgagttgattatgttatggtcattggtttcattcaacatcgtcgttgtcttgta 32538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 30739538 - 30739566
Alignment:
Q  97 actagtgtgttaacccgtgcaatgcacgg 125  Q
    |||||||||||||||||||||||||||||    
T  30739538 actagtgtgttaacccgtgcaatgcacgg 30739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 7159 - 7122
Alignment:
Q  97 actagtgtgttaacccgtgcaatgcacgggtgatagac 134  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7159 actagtgtgttaactcgtgcaatgcacgggtgatagac 7122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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