View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6654_low_2 (Length: 398)
Name: NF6654_low_2
Description: NF6654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6654_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 25606691 - 25606918
Alignment:
| Q |
18 |
aaatagttaatttagtctgtgagacactgttacttggtcccctggatatattaaaattacaaagacattctcatgtgtcttttgcaaaaatttcatgaac |
117 |
Q |
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| T |
25606691 |
aaatagttaatttagtctgtgagacactgttacttggtcccctggatatattaaaattacaaagacattctcatgtgtcttttgcaaaaatttcatgaac |
25606790 |
T |
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| Q |
118 |
caaacggatcaacataagacacatttgatgatcaaactaaaactaactaactaaagatgcattcaaagaccaaacttactaaagatgtatttatgtatgt |
217 |
Q |
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| T |
25606791 |
caaacggatcaacataagacacatttgatgatcaaactaaaactaactaactaaagatgtattcgaagaccaaacttactaaagatgtatttatgtatgt |
25606890 |
T |
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| Q |
218 |
tttttaattttgataaatatatagatta |
245 |
Q |
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| T |
25606891 |
tttttaattttgataaatatatagatta |
25606918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 237 - 390
Target Start/End: Original strand, 25607692 - 25607845
Alignment:
| Q |
237 |
tatagattatgatagaattccatacatgggctgtagctgaattgccatgattgatcactagttcgatgaaaatggaatactaaaccacacagtgagtggt |
336 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25607692 |
tatagattatgatagaagtccatacatgggctgtatctgaattgccatgattgatcactagttcgatgaaaatggaatactaaaccacacagtgagtggt |
25607791 |
T |
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| Q |
337 |
gatgttaacctattttactaaatggggaccaacccatatttgtgaacctttgct |
390 |
Q |
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| T |
25607792 |
gatgttaacctattttactaaatggggaccaacccatatttgtgaacctttgct |
25607845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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