View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6654_low_4 (Length: 261)
Name: NF6654_low_4
Description: NF6654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6654_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 36292185 - 36291960
Alignment:
| Q |
17 |
aagtcgtttacttagaacagctacatattttaaactgtcctttataaagtagtaagtcagacataattttgtttttaattgttatatagaccaagtatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36292185 |
aagtcgtttacttagaacagctacatattttaaactgtcctttataaagtagcaagtcagacataattttgtttttaattgttatatagaccaagtatat |
36292086 |
T |
|
| Q |
117 |
actatatatacaacataactataatttgtattctttaaccttaaaaaatagaggtaatattctttcttgttttaaggcaacgaaagtttagatgtatgtc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36292085 |
actatatatacaacataactataatttgtattctttaaccttaaaaaatagaggtaatattc-ttcttgttttaaggcaacgaaagtttagatgtatgtc |
36291987 |
T |
|
| Q |
217 |
taaaaagtaacatgcatatatccagaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
36291986 |
taaaaagtaacatgcatatatccagaa |
36291960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University