View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6655_high_1 (Length: 936)

Name: NF6655_high_1
Description: NF6655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6655_high_1
NF6655_high_1
[»] chr2 (17 HSPs)
chr2 (13-332)||(43231633-43231958)
chr2 (333-577)||(28240637-28240879)
chr2 (331-559)||(28239352-28239580)
chr2 (349-552)||(26379383-26379587)
chr2 (776-918)||(28240324-28240459)
chr2 (331-552)||(3833506-3833728)
chr2 (346-486)||(26380682-26380822)
chr2 (333-524)||(5062061-5062253)
chr2 (332-430)||(26271612-26271710)
chr2 (335-486)||(5060720-5060870)
chr2 (333-555)||(36681094-36681317)
chr2 (677-731)||(28240457-28240511)
chr2 (439-525)||(36404264-36404351)
chr2 (332-486)||(36682293-36682447)
chr2 (490-562)||(26273112-26273185)
chr2 (439-539)||(36403966-36404067)
chr2 (340-398)||(36404396-36404454)
[»] chr4 (12 HSPs)
chr4 (675-918)||(11385184-11385427)
chr4 (332-577)||(11385525-11385770)
chr4 (331-562)||(11384190-11384421)
chr4 (329-449)||(44493168-44493288)
chr4 (332-483)||(1560054-1560206)
chr4 (332-427)||(44491718-44491813)
chr4 (326-479)||(32134958-32135113)
chr4 (331-399)||(32133459-32133527)
chr4 (331-431)||(21072144-21072243)
chr4 (343-399)||(29215062-29215118)
chr4 (497-562)||(32133614-32133680)
chr4 (344-399)||(29213939-29213994)
[»] chr8 (15 HSPs)
chr8 (675-918)||(42128354-42128597)
chr8 (332-577)||(42128695-42128939)
chr8 (329-562)||(42127356-42127589)
chr8 (350-577)||(45015326-45015551)
chr8 (776-918)||(45015675-45015817)
chr8 (333-552)||(6132432-6132651)
chr8 (332-486)||(6133648-6133804)
chr8 (332-483)||(2376914-2377066)
chr8 (333-483)||(38119724-38119875)
chr8 (331-483)||(43711584-43711737)
chr8 (352-455)||(43713121-43713224)
chr8 (342-464)||(28322724-28322846)
chr8 (331-440)||(4629678-4629786)
chr8 (332-557)||(28324928-28325151)
chr8 (699-731)||(45015645-45015677)
[»] chr6 (4 HSPs)
chr6 (333-552)||(22970091-22970310)
chr6 (333-552)||(23818084-23818303)
chr6 (333-449)||(22971413-22971529)
chr6 (333-449)||(23816869-23816985)
[»] chr3 (8 HSPs)
chr3 (331-552)||(38524350-38524563)
chr3 (335-517)||(38525650-38525833)
chr3 (329-483)||(45511019-45511174)
chr3 (331-525)||(2766224-2766420)
chr3 (347-431)||(2753332-2753416)
chr3 (344-455)||(45512562-45512673)
chr3 (497-558)||(45512469-45512531)
chr3 (331-448)||(4273714-4273831)
[»] chr5 (4 HSPs)
chr5 (351-452)||(8284909-8285010)
chr5 (331-468)||(35238039-35238176)
chr5 (344-455)||(35237298-35237410)
chr5 (346-399)||(40415800-40415853)
[»] chr7 (3 HSPs)
chr7 (821-918)||(7224418-7224515)
chr7 (55-91)||(16687184-16687220)
chr7 (55-91)||(17661420-17661456)
[»] chr1 (1 HSPs)
chr1 (344-486)||(48677991-48678133)
[»] scaffold0912 (1 HSPs)
scaffold0912 (333-398)||(1597-1662)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-141; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 43231633 - 43231958
Alignment:
Q  13 cacagaggaactcccataccgcacagaagcaagtttccaccgatcaggatcgttgatgtgatctctaatgaactcccgcattcgtcgttcagttttactg 112  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43231633 cacagaggaactcccataccgcacagaagcaaatctccaccgatcaggatcgttgatgtgatctctaatgaactcccgcattcgtcgttcagttttaccg 43231732  T
Q  113 ttcatggagacaattacaaacgactcccctatataaaggtggctacgtgccacgacggggacaagttacacannnnnnnnaccactttcactaattcttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||    
T  43231733 ttcatggagacaattacaaacgactcccctatataaaggtggctacgtgccacgacggggacaagttacacattttttttaccactttgactaattcttc 43231832  T
Q  213 taccaagatctctataatatttatttaacctcactgtaattttcgtggagaactacctctgccgtgaactaaagtagc------ggatcaaaaaatcatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      ||||||||||||||||    
T  43231833 taccaagatctctataatatttatttaacctcactgtaattttcgtggagaactacctctgtcgtgaactaaagtagctctgctggatcaaaaaatcatt 43231932  T
Q  307 tgtatactttacgttgattaaatata 332  Q
    ||||||||||| ||||||||||||||    
T  43231933 tgtatactttaagttgattaaatata 43231958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 333 - 577
Target Start/End: Complemental strand, 28240879 - 28240637
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  28240879 ggcttaattacataaatggtcccttaaataattatgaaattttaatttggtccccttattaattttcgtcccattttggtcctttaagttacctccgtcc 28240780  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtattca 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||     
T  28240779 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttccatttcatcaccttcatcgtaaaacccagaaaatttatcgtattct 28240680  T
Q  533 tcaccaaatccagaaaaattcatcatcttcgtcaccttgaatatc 577  Q
    |||||||| ||||||||||||||  ||||| ||||||||||||||    
T  28240679 tcaccaaaaccagaaaaattcat--tcttcatcaccttgaatatc 28240637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 331 - 559
Target Start/End: Original strand, 28239352 - 28239580
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||    
T  28239352 taggcttaaatacataaatggtcccttaaataattatgagatttcaatttggtccccttaataattttcgtcccattttggtcctttaaattacctacgt 28239451  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtatt 530  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||    
T  28239452 ccatcatttaaatccattctattaacttttgtgaaaaactgttaacattcatcttccatttcatcacgttcatcttaaaatccagaaaattcatcgtatt 28239551  T
Q  531 catcaccaaatccagaaaaattcatcatc 559  Q
    |||||||||  ||||||||||||||||||    
T  28239552 catcaccaatcccagaaaaattcatcatc 28239580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 349 - 552
Target Start/End: Original strand, 26379383 - 26379587
Alignment:
Q  349 tggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaatccatt 448  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||| ||||||||| ||| ||||| | |||||||||||| |||    
T  26379383 tggtcccttaaataattatgaaattttaatttggacctcttattaattttcgtcccattttagtcctttaatttatctccgcccatcatttaaatctatt 26379482  T
Q  449 ctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatcgtattcatcaccaaatccagaa 547  Q
     ||||||||||||| ||||| |||||||||||||||| ||  | ||||| ||||||  | |||||||||||||||||| | ||||| | |||| |||| |    
T  26379483 atgttaacttttgttaaaaaatgttaacattcatcttcctcctacatcaacttcattctcaaacccagaaaattcatcatcttcataatcaaacccagca 26379582  T
Q  548 aaatt 552  Q
    |||||    
T  26379583 aaatt 26379587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 776 - 918
Target Start/End: Complemental strand, 28240459 - 28240324
Alignment:
Q  776 caaccccacacctctccttgatttcagaaagtgaaattcctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcatagaa 875  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||      |||| ||||||||||||    
T  28240459 caaccccacacctctccttgattccagaaagtgaaattcctccccaaattaactattt-cactcataaaaattcaac------caatgacaatcatagaa 28240367  T
Q  876 attctaacctttaaaactttttcccaaattttcaaaccctaac 918  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  28240366 attctaacctttaaaacttttccccaaattttcaaaccctaac 28240324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 331 - 552
Target Start/End: Original strand, 3833506 - 3833728
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| ||| |||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||||| ||| ||||||||| ||| ||    
T  3833506 taggcttaattatataattggtcccttaaataattatgagattttgatttagtcctcttattaattttcaccccattttagtcatttaagttatctctgt 3833605  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctat-ttcatcaccttcatcataaaacccagaaaattcatcgtat 529  Q
    ||  || |||||| ||||| || |  ||||   ||||| |||||||||||||||||| | ||||||| ||||||| | |||||||||||||||||| | |    
T  3833606 ctgccacttaaattcattccgtcagattttaataaaaattgttaacattcatcttctttgttcatcaacttcatccttaaacccagaaaattcatcatct 3833705  T
Q  530 tcatcaccaaatccagaaaaatt 552  Q
    |||| |||||||||| |||||||    
T  3833706 tcataaccaaatccataaaaatt 3833728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 346 - 486
Target Start/End: Complemental strand, 26380822 - 26380682
Alignment:
Q  346 aaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaatcc 445  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||  |||||||||||||| ||||||||||||||||| ||||| |    
T  26380822 aaattgtcccttaaataattatgaaattttgatttggtcctcttattaattttcacccttttttggtcctttaatttacctccgtctatcatctaaattc 26380723  T
Q  446 attctgttaacttttgtgaaaaactgttaacattcatcttc 486  Q
    ||| |||||| |||||| ||||| | |||||||||||||||    
T  26380722 attatgttaatttttgttaaaaaatattaacattcatcttc 26380682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 333 - 524
Target Start/End: Complemental strand, 5062253 - 5062061
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| || |||  ||||||||||| ||      
T  5062253 ggcttaattacataaatggtcccttaaataattatgagatttcattttggtccccttattaattttcatctcattctgatcccataagttacctctgtta 5062154  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatc-ttctatttcatcaccttcatcataaaacccagaaaattcat 524  Q
     |||  ||||| ||||| ||||| ||||||  |||| |||||||||||||| || |  ||| ||| ||||||| | |||||||||||||||||    
T  5062153 gtcaaataaattcattccgttaatttttgttcaaaattgttaacattcatctttttcattcttcaacttcatccttaaacccagaaaattcat 5062061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 332 - 430
Target Start/End: Original strand, 26271612 - 26271710
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    ||||||| |||||| | ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  26271612 aggcttaattacatgattggtcccttaaataattatgaaatttcaatttggtccctttaataattttcatcccattttggtcatttaagttacctccgt 26271710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 335 - 486
Target Start/End: Original strand, 5060720 - 5060870
Alignment:
Q  335 cttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctat 434  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| || |||| | ||||  |||||||| ||||||  |    
T  5060720 cttaattacataaatggtcccttaaataattatgagatttcattttgatccccttattaattttcgtctcattctagtcccataagttacttccgtcagt 5060819  T
Q  435 catttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttc 486  Q
    ||  ||||| |||| | |||||||||||  ||||| ||||||||||||||||    
T  5060820 caaataaat-cattatattaacttttgttcaaaaccgttaacattcatcttc 5060870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 333 - 555
Target Start/End: Original strand, 36681094 - 36681317
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| |||||  ||||||||||||| |||||||||||||| |  ||||||||   |||||||||| |  || ||| ||||  |||||| ||||||||     
T  36681094 ggcttaattacaagaatggtcccttaactaattatgagatttcatattggtcccacaattaattttcgtttcaattttgtcccataagtttcctccgtca 36681193  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatc-ttctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
     |||  |||||||||| |||||||||||||  |||| |||||||||||||| ||||  ||||||| ||||||| | || |||| |||||||||| | |||    
T  36681194 gtcaaataaatccattatgttaacttttgttcaaaaatgttaacattcatctttctccttcatcatcttcatcctcaagcccataaaattcatcatcttc 36681293  T
Q  532 atcaccaaatccagaaaaattcat 555  Q
    ||   |||| ||||||||||||||    
T  36681294 atacacaaacccagaaaaattcat 36681317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 677 - 731
Target Start/End: Complemental strand, 28240511 - 28240457
Alignment:
Q  677 atttaactcttttcccagcatcataataacaacagacgccatccccttttcccaa 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28240511 atttaactcttttcccagcatcataataacaacagacgccatcccctttttccaa 28240457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 439 - 525
Target Start/End: Complemental strand, 36404351 - 36404264
Alignment:
Q  439 taaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatc 525  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||||    
T  36404351 taaatccattctgttaacttttgttcaaaaccgttaacattcatcttcctccttcatcaacttcatcttcaaacccagaaaattcatc 36404264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 332 - 486
Target Start/End: Complemental strand, 36682447 - 36682293
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||| |||||  ||| ||||||||| |||||||||||||| |  ||||| ||   |||||||||| |  || ||||||||  ||||||  |||||||    
T  36682447 aggcttaattacaagaatagtcccttaactaattatgagatttcacattggttccacaattaattttcgtttcagtttggtcccataagttttctccgtc 36682348  T
Q  432 tatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttc 486  Q
      |||  |||||||||||| |||||||||||  ||||  ||||||||||||||||    
T  36682347 ggtcaaataaatccattctattaacttttgttcaaaaaagttaacattcatcttc 36682293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 490 - 562
Target Start/End: Complemental strand, 26273185 - 26273112
Alignment:
Q  490 ttcatcaccttcatcataaaacccag-aaaattcatcgtattcatcaccaaatccagaaaaattcatcatcttc 562  Q
    |||||| |||||||||| |||||||| |||||||||| | |||| ||| ||| |||||||||||||||||||||    
T  26273185 ttcatccccttcatcatcaaacccaggaaaattcatcttcttcaacactaaacccagaaaaattcatcatcttc 26273112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 439 - 539
Target Start/End: Original strand, 36403966 - 36404067
Alignment:
Q  439 taaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatcgtattcatcacc 537  Q
    |||||||||||| |||||||||||  ||||| ||||| ||||||||| ||  ||||||| ||||||| | |||| ||||||||||||| | ||||| |||    
T  36403966 taaatccattctattaacttttgttcaaaaccgttaatattcatcttcctccttcatcaacttcatcctcaaactcagaaaattcatcatcttcataacc 36404065  T
Q  538 aa 539  Q
    ||    
T  36404066 aa 36404067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 36404454 - 36404396
Alignment:
Q  340 ttacataaatggtcccttaaataattatgagattttaatttggtccccttattaatttt 398  Q
    ||||||||||||||| |||| ||||||| |||||| | ||||||||| |||||||||||    
T  36404454 ttacataaatggtcctttaactaattataagatttcattttggtcccattattaatttt 36404396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 675 - 918
Target Start/End: Complemental strand, 11385427 - 11385184
Alignment:
Q  675 atatttaactcttttcccagcatcataataacaacagacgccatccccttttcccaaacccttcacttatcttttctcccttgtctctcttctcaccaca 774  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11385427 atatttaactcttttcccaacatcataataacaacagacgccatccccttttcccaaacccttcacttatcttttctcccttgtctctcttctcaccaca 11385328  T
Q  775 acaaccccacacctctccttgatttcagaaagtgaaattcctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcataga 874  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11385327 acaaccccacacctctccttgattccagaaagcgaaattcctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcataga 11385228  T
Q  875 aattctaacctttaaaactttttcccaaattttcaaaccctaac 918  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  11385227 aattctaacctttaaaacttttccccaaattttcaaaccctaac 11385184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 332 - 577
Target Start/End: Complemental strand, 11385770 - 11385525
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||  |||||||||||| ||||||||||||| |||||||||| ||| ||    
T  11385770 aggcttaattacataaatggtcctttaaataattatgagatttcaatttggtccatttattaattttcgtcccattttggtcttttaagttacatccctc 11385671  T
Q  432 tatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  11385670 tatcatttaaatccattatgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcgtaaaatccagaaaattcatcgtattc 11385571  T
Q  532 atcaccaaatccagaaaaattcatcatcttcgtcaccttgaatatc 577  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||    
T  11385570 atcagcaaacccagaaaaattcatcatcttcatcaccttgaatatc 11385525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 331 - 562
Target Start/End: Original strand, 11384190 - 11384421
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| | |||||| |||||||||| ||||||||||    
T  11384190 taggcttaattatataaatggtcccttaaataattatgagatttcaatttggtcccattaataattttcgttccatttcggtcctttaaattacctccgt 11384289  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtatt 530  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||    
T  11384290 ccatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttccatttcatcaccttcatcgtaaaatccagaaaattcatcatatt 11384389  T
Q  531 catcaccaaatccagaaaaattcatcatcttc 562  Q
    ||||||||||||||||||||||||||||||||    
T  11384390 catcaccaaatccagaaaaattcatcatcttc 11384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 329 - 449
Target Start/End: Complemental strand, 44493288 - 44493168
Alignment:
Q  329 tataggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctcc 428  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||    
T  44493288 tataagcttaattacataaatggtcccttaaataattatgagattttaatttggtccctttattaattttcgcctcattttggtcctttaagttacctcc 44493189  T
Q  429 gtctatcatttaaatccattc 449  Q
    |||   || ||||||||||||    
T  44493188 gtccgccacttaaatccattc 44493168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 332 - 483
Target Start/End: Original strand, 1560054 - 1560206
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||| ||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||  |||| ||| ||||||||| |||||||||||    
T  1560054 aggcttaattacataaatgatcccttaaataattatgaaatttcaatttgatccccttattaattttcgccccaatttagtcctttaaattacctccgtc 1560153  T
Q  432 tatcatttaaatccattctgttaacttttgt-gaaaaactgttaacattcatc 483  Q
     |||| ||||||||||| |||||| | |||| ||||||  |||||||||||||    
T  1560154 catcaattaaatccattatgttaaatcttgtggaaaaaacgttaacattcatc 1560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 44491718 - 44491813
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctc 427  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  44491718 aggcttaattacataaatggtcccttaaataattatgagatttcaatttggtcccattattaattttcgcctcattttggtcctttaagttacctc 44491813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 326 - 479
Target Start/End: Complemental strand, 32135113 - 32134958
Alignment:
Q  326 aaatataggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcc-cattttggtcctttaagttac 424  Q
    |||| |||||||| ||||||||||| |||||||||| |||||||||||| ||| ||||||| |||||||||||   |  |||||| ||||  ||||||||    
T  32135113 aaatttaggcttaattacataaatgctcccttaaatcattatgagatttcaatatggtccctttattaatttttcgcttcattttagtcccataagttac 32135014  T
Q  425 ctccgtctatcatttaaatccattctgttaa--cttttgtgaaaaactgttaacatt 479  Q
    |||||||  |||  ||||| |||||||||||  | |||||||||||| |||||||||    
T  32135013 ctccgtcagtcaaataaattcattctgttaaatcctttgtgaaaaac-gttaacatt 32134958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 32133459 - 32133527
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttc 399  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  32133459 taggtttaattatataaatggtcccttaaataattatgagatttcaatatggtccccttattaattttc 32133527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 21072243 - 21072144
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||||| ||| |||| ||||||||| |||||||||||||| |  |||||||||||||||||||||   ||||| ||||||| ||| ||||||||||    
T  21072243 taggcttatt-acacaaatagtcccttaactaattatgagatttcatgttggtccccttattaattttcgctccattatggtcctataatttacctccgt 21072145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 29215118 - 29215062
Alignment:
Q  343 cataaatggtcccttaaataattatgagattttaatttggtccccttattaattttc 399  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  29215118 cataaatggtcccttaactaattatgagattttatgttggtccccttattaaatttc 29215062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 562
Target Start/End: Original strand, 32133614 - 32133680
Alignment:
Q  497 ccttcatcataaaacccag-aaaattcatcgtattcatcaccaaatccagaaaaattcatcatcttc 562  Q
    ||||||||||  ||||||| |||||||||| | |||||||| ||| |||||||||||||||||||||    
T  32133614 ccttcatcatctaacccagcaaaattcatcttcttcatcactaaacccagaaaaattcatcatcttc 32133680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 29213939 - 29213994
Alignment:
Q  344 ataaatggtcccttaaataattatgagattttaatttggtccccttattaattttc 399  Q
    |||||||||||||||| |||| ||||||||| |  ||||| |||||||||||||||    
T  29213939 ataaatggtcccttaactaatgatgagatttcatgttggttcccttattaattttc 29213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 675 - 918
Target Start/End: Complemental strand, 42128597 - 42128354
Alignment:
Q  675 atatttaactcttttcccagcatcataataacaacagacgccatccccttttcccaaaccctt-cacttatcttttctcccttgtctctcttctcaccac 773  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42128597 atatttaactcttttcccagcatcataataacaacagacgccatccccttttcccaaaccctttcacttatcttttctcccttgtctctcttctcaccac 42128498  T
Q  774 aacaaccccacacctctccttgatttcagaaagtgaaattcctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcatag 873  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42128497 aacaaccccacacctctccttgattccagaaagtgaaattcc-ccccaaattaactatttacaatcatagacattcaaccaattacaatcacaatcatag 42128399  T
Q  874 aaattctaacctttaaaactttttcccaaattttcaaaccctaac 918  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42128398 aaattctaacctttaaaacttttccccaaattttcaaaccctaac 42128354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 332 - 577
Target Start/End: Complemental strand, 42128939 - 42128695
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||||| ||    
T  42128939 aggcttaattacataaatggtcctttaaataattatgagatttcaatttggttcctttattaattttcgtcccattttggtcctttaagttacctccctc 42128840  T
Q  432 tatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  42128839 tatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcgtaaaatccagaaaattcatcgcattc 42128740  T
Q  532 atcaccaaatccagaaaaattcatcatcttcgtcaccttgaatatc 577  Q
    ||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  42128739 atcaccaaaccca-aaaaatttatcatcttcatcaccttgaatatc 42128695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 329 - 562
Target Start/End: Original strand, 42127356 - 42127589
Alignment:
Q  329 tataggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctcc 428  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||| |||||||||| ||||||||    
T  42127356 tataggcttaattacataaatggtcccttaaataattatgagatttcaatttggtccccttaataattttcgttccatttcggtcctttaaattacctcc 42127455  T
Q  429 gtctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgta 528  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||    
T  42127456 gtccatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttccatttcatcaccttcatcgtaaaatccagaaaattcatcata 42127555  T
Q  529 ttcatcaccaaatccagaaaaattcatcatcttc 562  Q
    |||||||||||| ||| |||||||||||||||||    
T  42127556 ttcatcaccaaacccataaaaattcatcatcttc 42127589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 350 - 577
Target Start/End: Original strand, 45015326 - 45015551
Alignment:
Q  350 ggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaatccattc 449  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45015326 ggtcccttaaataattatgaaattttaatttgatccccttattaattttcgtcccattttggtcctttaagttacctccgtccatcatttaaatccattc 45015425  T
Q  450 tgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtattcatcaccaaatccagaaaa 549  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||| |||||||||| ||||||||    
T  45015426 tgttaacttttgtgaaaaactgttaacattcatcttccatttcatcaccttcatcgtaaaacccaaaaaattcatcatatccatcaccaaacccagaaaa 45015525  T
Q  550 attcatcatcttcgtcaccttgaatatc 577  Q
    ||||||  ||||| ||||||||||||||    
T  45015526 attcat--tcttcatcaccttgaatatc 45015551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 776 - 918
Target Start/End: Original strand, 45015675 - 45015817
Alignment:
Q  776 caaccccacacctctccttgatttcagaaagtgaaattcctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcatagaa 875  Q
    ||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45015675 caacctcacacatctccttgattccagtaagtgaaatttctccccaaattaactatttacaatcatagaaattcaaccaattacaatcacaatcatagaa 45015774  T
Q  876 attctaacctttaaaactttttcccaaattttcaaaccctaac 918  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  45015775 attctaacctttaaaacttttccccaaattttcaaaccctaac 45015817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 333 - 552
Target Start/End: Original strand, 6132432 - 6132651
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||||| |||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||| | ||||||||||||||||| ||| ||| |||     
T  6132432 ggcttaattacacaaatggtcccttaa-taattatgaaattttgatttggtcctcttattaattttcgttccattttggtcctttaatttatctctgtcc 6132530  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||  | ||||| ||||||| | |||||||||||||||||| |  ||    
T  6132531 atcatttaaatccattatgttaacttttgttaaaaaatgttaacattcatcttcctcctgcatcaacttcatcctcaaacccagaaaattcatcatcatc 6132630  T
Q  532 atcaccaaatccagaaaaatt 552  Q
    || || ||| |||||||||||    
T  6132631 ataactaaacccagaaaaatt 6132651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 332 - 486
Target Start/End: Complemental strand, 6133804 - 6133648
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccg-- 429  Q
    ||||||| ||| | |||||||||||||||||||||||| ||||  |||| |||  |||||||||||||  ||||||||||||||||||||||| ||||      
T  6133804 aggcttaattatacaaatggtcccttaaataattatgaaatttcgattttgtcttcttattaattttcgccccattttggtcctttaagttacatccgtc 6133705  T
Q  430 tctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttc 486  Q
    ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  6133704 tctatcatttaaatccattatgttaacttttgttaaaaaatgttaacattcatcttc 6133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 332 - 483
Target Start/End: Original strand, 2376914 - 2377066
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||   | || ||||||||||||| ||||| |||||    
T  2376914 aggcttaattacataaatggtcccttaaataattatgaaatttcaatttgatccccttattaatttttgcctcaatttggtcctttaaattacccccgtc 2377013  T
Q  432 tatcatttaaatccattctgttaacttttgt-gaaaaactgttaacattcatc 483  Q
     |||| ||||||||||| |||||| | |||| |||||| |||||| |||||||    
T  2377014 catcagttaaatccattatgttaaatcttgtggaaaaaatgttaatattcatc 2377066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 333 - 483
Target Start/End: Original strand, 38119724 - 38119875
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||| |||| |||  |||||||| ||||||||||||    
T  38119724 ggcttaattatataaatggtcttttaaataattatgaaattttaatttggtcctcttattaattttcaccccaatttaatcctttaaattacctccgtct 38119823  T
Q  433 atcatttaaatccattctgttaacttttgt-gaaaaactgttaacattcatc 483  Q
    |||| || ||||||||||| ||| | |||| ||||||  |||||||||||||    
T  38119824 atcaattgaatccattctgataaatcttgtggaaaaaacgttaacattcatc 38119875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 331 - 483
Target Start/End: Original strand, 43711584 - 43711737
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||   ||||| ||||||  ||||||||||||||    
T  43711584 taggcttaattacataaatggtcccttaaataattatgagatttcaatatgatccctttattaattttcgctccattctggtcccataagttacctccgt 43711683  T
Q  431 ctatcatttaaatccattctgttaacttttgtga-aaaactgttaacattcatc 483  Q
    |  |||  |||||||||| |||||| |||| ||| ||||  |||||||||||||    
T  43711684 cagtcaaataaatccattatgttaaattttttgagaaaaacgttaacattcatc 43711737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 43713224 - 43713121
Alignment:
Q  352 tcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaatccattctg 451  Q
    |||||||||||||||||| |||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||||  | ||  ||||||||||| |    
T  43713224 tcccttaaataattatgaaatttcaatttgatccccttaatagttttcgtcccattttggtcctttaagttacctccgttaaccaaataaatccattccg 43713125  T
Q  452 ttaa 455  Q
    ||||    
T  43713124 ttaa 43713121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 342 - 464
Target Start/End: Original strand, 28322724 - 28322846
Alignment:
Q  342 acataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaa 441  Q
    |||||||| |||||||||||||||||||||||| ||| || ||| |||||||||||||   ||||| ||||||  ||||||||||||||| ||||  |||    
T  28322724 acataaatagtcccttaaataattatgagatttcaatatgatccacttattaattttccctccattatggtcccataagttacctccgtcaatcaaataa 28322823  T
Q  442 atccattctgttaacttttgtga 464  Q
    ||||||| |||||| | ||||||    
T  28322824 atccattatgttaaatattgtga 28322846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 4629786 - 4629678
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| |||||| | | |||||||||||||||| ||||||| ||||| ||||||||||||||||||  |||||||  || ||| |||||||||||||    
T  4629786 taggcttaattacatgacttgtcccttaaataattaggagatttcaatttagtccccttattaattttcgccccatttaagt-cttcaagttacctccgt 4629688  T
Q  431 ctatcattta 440  Q
    | ||| ||||    
T  4629687 ccatctttta 4629678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 332 - 557
Target Start/End: Complemental strand, 28325151 - 28324928
Alignment:
Q  332 aggcttatttacataaatggtcccttaaataattatgagatttta------atttggtccccttattaattttcatcccattttggtcctttaagttacc 425  Q
    ||||||| ||| |||||||||| |||||||||||||||||||| |      || ||||||||||||||||||||  |||||| || |||  |||||||||    
T  28325151 aggcttaattagataaatggtcgcttaaataattatgagatttcaatatatatatggtccccttattaattttcgccccattatgatcccataagttacc 28325052  T
Q  426 tccgtctatcatttaaatccattctgttaa--cttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccag-aaaattc 522  Q
    || |||  |||  ||||| |||| ||||||   ||||| ||||||| ||||||||||||          ||| |||||||||| |||||||| |||||||    
T  28325051 tctgtcggtcaaataaattcattatgttaaatattttgggaaaaac-gttaacattcat----------atccccttcatcatcaaacccagaaaaattc 28324963  T
Q  523 atcgtattcatcaccaaatccagaaaaattcatca 557  Q
    ||| | ||||||||  || | ||||||||||||||    
T  28324962 atcttcttcatcactgaacctagaaaaattcatca 28324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 731
Target Start/End: Original strand, 45015645 - 45015677
Alignment:
Q  699 ataataacaacagacgccatccccttttcccaa 731  Q
    |||||||||||||||||||||||||||||||||    
T  45015645 ataataacaacagacgccatccccttttcccaa 45015677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 333 - 552
Target Start/End: Original strand, 22970091 - 22970310
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||   ||| ||||||||||||| ||||||||||      
T  22970091 ggcttaattatataaatggtcccttaaataattatgaaatttcaatttggcccccttattaattttcgctccaatttggtcctttaaattacctccgttc 22970190  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
    |||| |||||| |||||  |||| ||| || |||||  ||||||||||||||| ||  ||||| | ||| ||| | |||||||||||||||| | | |||    
T  22970191 atcagttaaattcattccattaattttggttaaaaaacgttaacattcatcttcctccttcat-aactttatcctcaaacccagaaaattcaccatcttc 22970289  T
Q  532 atcaccaaatccagaaaaatt 552  Q
    || ||||||||||||||||||    
T  22970290 ataaccaaatccagaaaaatt 22970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 333 - 552
Target Start/End: Complemental strand, 23818303 - 23818084
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||| |||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||   ||| ||||||||||||| ||||||||||      
T  23818303 ggcttaattatataaatggtcccttaaataattatgaaatttcaatttggcccccttattaattttcgctccaatttggtcctttaaattacctccgttc 23818204  T
Q  433 atcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatcgtattc 531  Q
    |||| |||||| |||||  |||| ||| || |||||  ||||||||||||||| ||  ||||| | ||| ||| | |||||||||||||||| | | |||    
T  23818203 atcagttaaattcattccattaattttggttaaaaaacgttaacattcatcttcctccttcat-aactttatcctcaaacccagaaaattcaccatcttc 23818105  T
Q  532 atcaccaaatccagaaaaatt 552  Q
    || ||||||||||||||||||    
T  23818104 ataaccaaatccagaaaaatt 23818084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 22971529 - 22971413
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    ||| ||||||| ||||| |||||||||||     
T  22971529 ggcttaattatataaatagtcccttaaataattatgaaatttcaatttggtccccttattaatttttgctccaatttggtcttttaaattacctccgtcg 22971430  T
Q  433 atcatttaaatccattc 449  Q
    |||| ||||||||||||    
T  22971429 atcaattaaatccattc 22971413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 333 - 449
Target Start/End: Original strand, 23816869 - 23816985
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtct 432  Q
    |||||| ||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    ||| ||||||| ||||| |||||||||||     
T  23816869 ggcttaattatataaatagtcccttaaataattatgaaatttcaatttggtccccttattaatttttgctccaatttggtcttttaaattacctccgtcg 23816968  T
Q  433 atcatttaaatccattc 449  Q
    |||| ||||||||||||    
T  23816969 atcaattaaatccattc 23816985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 331 - 552
Target Start/End: Original strand, 38524350 - 38524563
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| |||||||||||||||||||| |||||||||||||| | ||||||||| ||| |||||||  | ||| | ||||||  ||| || |||||||    
T  38524350 taggcttaattacataaatggtcccttaactaattatgagatttcattttggtcccattaataatttttgttccaatatggtcccataaatttcctccgt 38524449  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaactgttaacattcatcttctatttcatcaccttcatcataaaacccagaaaattcatcgtatt 530  Q
    |  |||  ||||||||||||||||||||||||  ||||| ||||||||||||||||        | |||||||| | |||||||||||||| ||| | ||    
T  38524450 cagtcaaataaatccattctgttaacttttgttcaaaaccgttaacattcatcttc--------ctccttcatcctcaaacccagaaaattaatcatctt 38524541  T
Q  531 catcaccaaatccagaaaaatt 552  Q
    ||| |||||| |||||||||||    
T  38524542 cataaccaaacccagaaaaatt 38524563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 335 - 517
Target Start/End: Complemental strand, 38525833 - 38525650
Alignment:
Q  335 cttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctat 434  Q
    |||| |||||||||||||||||||| |||||||||||||| | ||||||||||||| |||||||  |  || | ||||||| ||| || ||||||||  |    
T  38525833 cttaattacataaatggtcccttaactaattatgagatttcattttggtccccttagtaatttttgtttcaatatggtcctataaatttcctccgtcagt 38525734  T
Q  435 catttaaatccattctgttaacttttgtgaaaaactgttaacattcatctt-ctatttcatcaccttcatcataaaacccagaa 517  Q
    ||  ||||||||||||||||||||||||  ||||| ||||||||||||||| ||  ||||||| ||||||| | ||||||||||    
T  38525733 caaataaatccattctgttaacttttgttcaaaaccgttaacattcatcttcctccttcatcaacttcatccttaaacccagaa 38525650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 329 - 483
Target Start/End: Original strand, 45511019 - 45511174
Alignment:
Q  329 tataggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctcc 428  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||  | |||||| || |  ||||||||||||    
T  45511019 tataggcttaattacataaatgctcccttaaataattatgagatttcaatatggtccctttattaattttcgcctcattttagttccataagttacctcc 45511118  T
Q  429 gtctatcatttaaatccattctgttaa--cttttgtgaaaaactgttaacattcatc 483  Q
    |||  |||  ||||| |||||||||||  | |||||||||||| |||||||||||||    
T  45511119 gtcagtcaaataaattcattctgttaaatcctttgtgaaaaac-gttaacattcatc 45511174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 331 - 525
Target Start/End: Original strand, 2766224 - 2766420
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| | ||||||||| |||||||| |||||||||| ||||||  ||||||||||||||||||||  | ||||||||||| |||| ||||||  ||    
T  2766224 taggcttaataacataaatgatcccttaattaattatgagtttttaacatggtccccttattaattttcgcctcattttggtcccttaaattacctgtgt 2766323  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaactg-ttaacattcatctt-ctatttcatcaccttcatcataaaacccagaaaattcatc 525  Q
    | | || ||||||| |||| || || |||  | ||||| || |||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||||    
T  2766324 ccaccaattaaatctattccgtcaattttcatcaaaaaatgtttaacattcatcttcctccttcatcaacttcatcttcaaacccagaaaattcatc 2766420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 2753416 - 2753332
Alignment:
Q  347 aatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtc 431  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||||||||||  | |||||||||||||||| |||||||||||    
T  2753416 aatggtcccttaactaattatgagtttttaatatgatccccttattaattttcgcctcattttggtcctttaaattacctccgtc 2753332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 344 - 455
Target Start/End: Complemental strand, 45512673 - 45512562
Alignment:
Q  344 ataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaat 443  Q
    ||||||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||  |||||| |||||   ||||||||||||||| ||||  |||||    
T  45512673 ataaatggtcccttaaataattatgagatttcaatatgacccccttattaactttcgccccattctggtctcataagttacctccgtcaatcaaataaat 45512574  T
Q  444 ccattctgttaa 455  Q
    ||||| ||||||    
T  45512573 ccattttgttaa 45512562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 45512531 - 45512469
Alignment:
Q  497 ccttcatcataaaacccag-aaaattcatcgtattcatcaccaaatccagaaaaattcatcat 558  Q
    ||||||||||  ||||||| |||||||||| | |||||||| ||| |||||||||||||||||    
T  45512531 ccttcatcatctaacccagcaaaattcatcctcttcatcactaaacccagaaaaattcatcat 45512469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 448
Target Start/End: Original strand, 4273714 - 4273831
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| ||||||||||  ||| |||| |||||||||||||||| | |  || ||||||| |||||| | | ||| || |||| ||| ||||||  ||    
T  4273714 taggcttaattacataaataatcctttaactaattatgagattttattataatctccttattcattttcgttctattctgatcctgtaaattacctttgt 4273813  T
Q  431 ctatcatttaaatccatt 448  Q
    | |||| |||||||||||    
T  4273814 cgatcacttaaatccatt 4273831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 351 - 452
Target Start/End: Complemental strand, 8285010 - 8284909
Alignment:
Q  351 gtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaatccattct 450  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||  |||| |||| |||||||| ||| ||||||| |||| |||||||||||||    
T  8285010 gtcccttaaataattatgaaattttaatttggtccccttattaattttcgccccaatttgatcctttaaattatctccgtccatcaattaaatccattct 8284911  T
Q  451 gt 452  Q
    ||    
T  8284910 gt 8284909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 331 - 468
Target Start/End: Complemental strand, 35238176 - 35238039
Alignment:
Q  331 taggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgt 430  Q
    |||||||| ||| ||||||||| |||||||||||||| | |||| |||||| |||  |||||||||||| | | |  |||| ||||||| ||||||||||    
T  35238176 taggcttaattatataaatggttccttaaataattataaaatttcaatttgatccttttattaattttcgttctaaattggccctttaaattacctccgt 35238077  T
Q  431 ctatcatttaaatccattctgttaacttttgtgaaaaa 468  Q
    | |||| |||||||||||||||||| | ||||||||||    
T  35238076 ccatcaattaaatccattctgttaaatcttgtgaaaaa 35238039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 455
Target Start/End: Original strand, 35237298 - 35237410
Alignment:
Q  344 ataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcc-cattttggtcctttaagttacctccgtctatcatttaaa 442  Q
    |||||||||| ||||| ||||||||| |||| ||||| ||||| ||||||||||||  || || |||| || ||||| |||| |||||| ||||  ||||    
T  35237298 ataaatggtctcttaagtaattatgaaatttcaatttagtccctttattaattttcgccctcaatttgatcttttaaattacttccgtccatcaactaaa 35237397  T
Q  443 tccattctgttaa 455  Q
    | |||||||||||    
T  35237398 ttcattctgttaa 35237410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 399
Target Start/End: Complemental strand, 40415853 - 40415800
Alignment:
Q  346 aaatggtcccttaaataattatgagattttaatttggtccccttattaattttc 399  Q
    |||||||| ||||| |||||||||| ||| ||| || |||||||||||||||||    
T  40415853 aaatggtctcttaactaattatgagttttcaatatgatccccttattaattttc 40415800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 821 - 918
Target Start/End: Original strand, 7224418 - 7224515
Alignment:
Q  821 aaattaactatttacaatcatagaaattcaaccaattacaatcacaatcatagaaattctaacctttaaaactttttcccaaattttcaaaccctaac 918  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||   |||||||||||||||||||||    
T  7224418 aaatcaactatttgtaatcatagaaattcaaccaattacaatcacaatcattgtaattctagcctttaaaacttaaccccaaattttcaaaccctaac 7224515  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 16687184 - 16687220
Alignment:
Q  55 atcaggatcgttgatgtgatctctaatgaactcccgc 91  Q
    ||||||||| |||||||||||||||||||||||||||    
T  16687184 atcaggatcattgatgtgatctctaatgaactcccgc 16687220  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 17661420 - 17661456
Alignment:
Q  55 atcaggatcgttgatgtgatctctaatgaactcccgc 91  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17661420 atcaggatcattgatgtgatctctaatgaactcccgc 17661456  T

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Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 344 - 486
Target Start/End: Complemental strand, 48678133 - 48677991
Alignment:
Q  344 ataaatggtcccttaaataattatgagattttaatttggtccccttattaattttcatcccattttggtcctttaagttacctccgtctatcatttaaat 443  Q
    |||| |||| |||||||||||||||||||||  |||||||||| ||||||||||||   ||||||||||| ||||||||| ||||||| | || ||||||    
T  48678133 ataattggttccttaaataattatgagatttcgatttggtccctttattaattttcgctccattttggtcatttaagttatctccgtccaccacttaaat 48678034  T
Q  444 ccattctgttaacttttgtgaaaaactgttaacattcatcttc 486  Q
    |||||| || |  ||||   ||||| |||||||||||||||||    
T  48678033 ccattccgtcatattttaataaaaaatgttaacattcatcttc 48677991  T

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Target: scaffold0912 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 1597 - 1662
Alignment:
Q  333 ggcttatttacataaatggtcccttaaataattatgagattttaatttggtccccttattaatttt 398  Q
    |||||| ||||||||||| ||| |||| ||| ||||||||||||  ||  ||||||||||||||||    
T  1597 ggcttaattacataaatgatccattaactaactatgagattttatgttaatccccttattaatttt 1662  T

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