View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6656_low_4 (Length: 248)
Name: NF6656_low_4
Description: NF6656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6656_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18617687 - 18617916
Alignment:
| Q |
1 |
tgtttgtattactgtgggacttggtggtcagccgtttagatctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagat |
100 |
Q |
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| T |
18617687 |
tgtttgtattactatgggacttggtggtcagccgtttagatctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagat |
18617786 |
T |
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| Q |
101 |
cttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgagccttttgttcacttgttgatgatcccgctggagttgctgagcatgg |
200 |
Q |
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| T |
18617787 |
cttcatgacatgggtgttgttccacatgaaccagtaggaccagagccacatgagccttttgttcacatgttgatgatcccgctggagttgttgagcatgg |
18617886 |
T |
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| Q |
201 |
agcgagatgaggcattgtacctgaggagga |
230 |
Q |
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||| || |||||||||||||||||||||| |
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| T |
18617887 |
agcaggaggaggcattgtacctgaggagga |
18617916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 19240009 - 19239775
Alignment:
| Q |
1 |
tgtttgtattactgtgggacttggtggtcagccgtttagatctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagat |
100 |
Q |
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|||||| |||||| || |||||||||| |||||| || ||||||| |||||||| |||| || || || ||||||||||| || |||||||||||| | |
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| T |
19240009 |
tgtttggattactatgagacttggtggacagccgactatatctattattactcatgagactattgaaataattttaccattgtagaggttgtacttagct |
19239910 |
T |
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| Q |
101 |
cttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgagccttttgttca-cttgttgatgatcccgctggagttgctgagcatg |
199 |
Q |
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| T |
19239909 |
cttcatgacatgggtgttgtcccacctggactagtaggaccagagccacgtgagccctttgttcaccatgttgatgatcccgctgaagttgatgagaatg |
19239810 |
T |
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| Q |
200 |
gagcgagatgaggcattgtacctgaggaggaggat |
234 |
Q |
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| T |
19239809 |
gagcaggaggaggaattgcacctgaggaggaggat |
19239775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 141776 - 141923
Alignment:
| Q |
42 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggacc |
141 |
Q |
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| T |
141776 |
ctattgttactcatgaaaccacagagatgattttaccatttcagaggttgtacctagctctccatgacataggtgttgtccc------acccgtaggacc |
141869 |
T |
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| Q |
142 |
agagccacatgagccttttgttcact-tgttgatgatcccgctggagttgctga |
194 |
Q |
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| T |
141870 |
agacccacatgagccctttgttccctctgttgctgatcctgctgatgttgctga |
141923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 21620808 - 21620725
Alignment:
| Q |
42 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
125 |
Q |
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| T |
21620808 |
ctattgttactcatgaaaccacagagatgattctaccatttcagaggttgtacctagctctccatgacatgggtgttgtcccac |
21620725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 21628267 - 21628184
Alignment:
| Q |
42 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
125 |
Q |
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| T |
21628267 |
ctattgttactcgtgaaaccacagagatgattctaccatttcagaggttgtacctagctccccatgacatgggtgttgtcccac |
21628184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 24984331 - 24984231
Alignment:
| Q |
134 |
gtaggaccagagccacatgagccttttgtt-cacttgttgatgatcccgctggagttgctgagcatggagcgagatgaggcattgtacctgaggaggagg |
232 |
Q |
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||||||||||| ||||||||||| |||||| | ||||||| |||| | |||| ||||||||||| |||| || ||||| || |||||||||||||| |
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| T |
24984331 |
gtaggaccagacccacatgagccctttgttccccttgttgttgattctgctgatgttgctgagcagggagtaggaggaggccatgcacctgaggaggagg |
24984232 |
T |
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| Q |
233 |
a |
233 |
Q |
| |
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| T |
24984231 |
a |
24984231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 393027 - 392948
Alignment:
| Q |
46 |
tgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
125 |
Q |
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|||||||||| |||||| |||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||||||||| |
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| T |
393027 |
tgttactcatgagaccacagagatgattctaccattgtagaggttgtacctagctctccatgacatgggtgttgtcccac |
392948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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