View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6657_low_1 (Length: 423)
Name: NF6657_low_1
Description: NF6657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6657_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 24373645 - 24373940
Alignment:
| Q |
11 |
cacagattcaacatattttgccaaagcttannnnnnnacgagcaccttcattcacgagtcctcaaagttaatacatgttcatagtaaccaactaaccata |
110 |
Q |
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| T |
24373645 |
cacaaattcaacatattttgacaaagcttatttttttacgagcaccttcattcacgagtcctcaaagttaatacatgttgatagtaaccaactaaccata |
24373744 |
T |
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| Q |
111 |
aacaaccagaaatgtctacaatacttccttnnnnnnnt-gtatataatactgagttaaaaattaaaattgaaaataattgcggcgtgtgcatagaactaa |
209 |
Q |
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| T |
24373745 |
aacaaccaaaaatgtctacaatacttccttaaaaaaattgtatataatactgagttaaaaattaaagttgaaaataattgcggcgtgtgcatagaactaa |
24373844 |
T |
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| Q |
210 |
acaattgtacttccgtaaaaataaactacataattgtacttgttaatagaatgtcaaattgcactcgtaaacaa----atttgcctatcgaattct |
301 |
Q |
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| T |
24373845 |
acaattgtacttccgtaaaaataaactacacaattgtacctgttaatagaatgtcaaattgtacttgtaaacaaaaacatttgcctatcgaattct |
24373940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 286 - 404
Target Start/End: Original strand, 24373958 - 24374076
Alignment:
| Q |
286 |
ttgcctatcgaattctatgttggagtgaaacaaacatgtatgaaagaagatgaatggaatttaaaaataacactttattgatggaatgaatattaatgga |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24373958 |
ttgcctatcgaattctatgttggagtgaaacaaacatgtatgaaagaagatgaatggaatttaaaaataacactttattgatggaatgaatattaataga |
24374057 |
T |
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| Q |
386 |
aagaagtaacagagaagat |
404 |
Q |
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| T |
24374058 |
aagaagtaacagagaagat |
24374076 |
T |
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