View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6657_low_2 (Length: 385)
Name: NF6657_low_2
Description: NF6657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6657_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 42976241 - 42976376
Alignment:
| Q |
19 |
tcatatcaaccaatagttttgcaaaaaccaaaagcagaacaaagnnnnnnnnctcaaagatttatactataatctaatttactaatgcctgcagagattt |
118 |
Q |
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| T |
42976241 |
tcatatcaaccaatagttttgcaaaaaccaaaagcagaacaaagaaaaaaaactcaaagatttatactacaatctaatttactaatgcctgcagagattt |
42976340 |
T |
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| Q |
119 |
gaagcaaatggctttcaaagcaacagaaagaggcta |
154 |
Q |
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| T |
42976341 |
gaagcaaatggctttcaaagcaacagaaagaggcta |
42976376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 260 - 375
Target Start/End: Original strand, 42976533 - 42976648
Alignment:
| Q |
260 |
ctatctctaagtctaatacaatcttaaaacatgtgattacattcaattatttgattttttcgaataattaataatgttgatatgttggtgtcgaagtgtc |
359 |
Q |
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| T |
42976533 |
ctatctctaagtctaatacaatcttaaaacatgtgattacattcaattatttgattttttcgaataattaataatgttgatctgttggtgtcgaagtgtc |
42976632 |
T |
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| Q |
360 |
gtatttgatgtctgtg |
375 |
Q |
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| T |
42976633 |
gtacttggtgtatgtg |
42976648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 42976399 - 42976481
Alignment:
| Q |
183 |
gaagtgaaaaatttagaaatgaggtatttataaacaagaaagtacaaatgtttgttataataggttgttagtaagaactatct |
265 |
Q |
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| T |
42976399 |
gaagtgaaaaatttagaaatgaggtatttataaacaagaaagtacaaatgtttgttataataggttgttagttagaactatct |
42976481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 2373829 - 2373793
Alignment:
| Q |
293 |
tgattacattcaattatttgattttttcgaataatta |
329 |
Q |
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| T |
2373829 |
tgattacattcaattatttcattttttcgaatgatta |
2373793 |
T |
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