View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6657_low_6 (Length: 277)
Name: NF6657_low_6
Description: NF6657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6657_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 8528646 - 8528380
Alignment:
| Q |
1 |
cttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528646 |
cttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatg |
8528547 |
T |
|
| Q |
101 |
tttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacc--ta |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8528546 |
tttcgtcaatcatttgctttcacagctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccaccttta |
8528447 |
T |
|
| Q |
196 |
attacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaatt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
8528446 |
attacatctttggctttaatagttaatgggaaaaaaatcatgtggacacaatcttttgttactaatt |
8528380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 8535122 - 8534945
Alignment:
| Q |
92 |
gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatata |
188 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||| ||||||| ||||| || ||||||||||| |
|
|
| T |
8535122 |
gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagttattttccattatctaatatata |
8535023 |
T |
|
| Q |
189 |
ccacc--taattacatctt--tggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaatt |
262 |
Q |
| |
|
||||| |||||||||||| ||||| | ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8535022 |
ccacctttaattacatctttgtggctctgatagttaatggaaaaaaaatcacgtggacacaatcttttattactaatt |
8534945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 9442807 - 9442530
Alignment:
| Q |
1 |
cttactatttttccattccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggaga-----------a |
89 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
9442807 |
cttactattttgccattccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatgttggagaa |
9442708 |
T |
|
| Q |
90 |
aggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatata |
186 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9442707 |
aggttgtgatgtttcgtcaatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatata |
9442608 |
T |
|
| Q |
187 |
taccacc--taattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaatt |
262 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9442607 |
taccacctttaattacatctttggctttaatagttaatgggaaaaaaatcacgtggacacaatcttttgttactaatt |
9442530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University