View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6657_low_8 (Length: 228)
Name: NF6657_low_8
Description: NF6657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6657_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52875071 - 52874844
Alignment:
| Q |
1 |
aatagcacaagaaacgtagaagccgtaatgacaaagatgatagccccctttgtatctatgttaacaatttcgttttcagaatcatttgtcactctttcag |
100 |
Q |
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| T |
52875071 |
aatagcacaagaaacgtagaagccgtaatgacaaagatgatagccccctttgtatctatgttaacaatttcgttttcagaatcatttgtcactctttcag |
52874972 |
T |
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| Q |
101 |
ccggggaagatccctaaaataaaaaagaaacacacatatataaactaacatcctttaagattcagtagtaaaataactaaataaacttgcaatcattaaa |
200 |
Q |
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| T |
52874971 |
cagtggaagatccctaaaataaaaaagaaacacacatatataaactaacatcctttaagattcagtagtaaaataactaaataaacttgcaatcattaaa |
52874872 |
T |
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| Q |
201 |
ctaggtgaacacaagatgagaataagac |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
52874871 |
ctaggtgaacacaagatgagaataagac |
52874844 |
T |
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