View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6658_low_2 (Length: 484)
Name: NF6658_low_2
Description: NF6658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6658_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 14926130 - 14926589
Alignment:
| Q |
18 |
caaaagttacttgtgtactgtacccaaatgttatctctggtattggttataacttataactcttaatatctttttgaaactttccaatcaagtcataaaa |
117 |
Q |
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| T |
14926130 |
caaaggttacttgtgtactgtacccaaatgttatctctggtattggttataacttataactcttaatatctttttgaaactttccaatcaagtcataaaa |
14926229 |
T |
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| Q |
118 |
caattggaatttccactcttgcctattgtgtttcatactttactagatagataagactcttccacaacaactcttcctcaacaatgtattactctgttat |
217 |
Q |
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| T |
14926230 |
caattggaatttccactcttgcctattgtgtttcatactttactagatagataagactcttccacaacaactcttcctcaacaatgtattactctgttat |
14926329 |
T |
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| Q |
218 |
gatttttggtattgattagagttttgccaaactacaatcatttgattgtgtagaattcaccgttttgatatattcttatttataccctcaggtctcatga |
317 |
Q |
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| T |
14926330 |
gatttttggtattgattagagttttgccaaactacaatcatttgattgtgtagaattcaccgttttgatatattcttatttataccctcaggtctcatga |
14926429 |
T |
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| Q |
318 |
ggaaatgtctgagaaaatgatagattacattgttgatgaacacaatattgatttggattctcaactcctcaaaaaagtgaaggttagactcaaattatca |
417 |
Q |
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| T |
14926430 |
ggaaatgtctgagaaaatgatagattacattgttgatgaacacaatattgatttggattctcaactcctcaaaaaagtgaaggttagactcaaattatca |
14926529 |
T |
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| Q |
418 |
attaaatcttcaatttttctgcgttttttcaaactgaatttccttgatattcttgatgat |
477 |
Q |
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| T |
14926530 |
attaaatcttcaatttttctgcgttttttcaaactgaatttccttgatattcttgatgat |
14926589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 14895041 - 14895098
Alignment:
| Q |
114 |
aaaacaattggaatttccactcttgcctattgtgtttcatactttactagatagataa |
171 |
Q |
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| T |
14895041 |
aaaacaattagaatttcaactcttgcctattttgttttatactttacttgctagataa |
14895098 |
T |
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