View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6658_low_3 (Length: 461)
Name: NF6658_low_3
Description: NF6658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6658_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 43532970 - 43533411
Alignment:
| Q |
12 |
tcatcaccaaatctcagacatcatgccaaggatgttccaacacaatgtgaaaccttccttcctggtaagtatccatcttctcgccgaaccgcttcattct |
111 |
Q |
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| T |
43532970 |
tcatcaccaaatctcagacatcatgccaaggatgttccaacacaatgtgaaaccttccttcccggtaagtatccatcttctcgccgaaccgcttcattct |
43533069 |
T |
|
| Q |
112 |
cctcttattcatcatcactttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533070 |
cctcttattcatcatcactttcaccttcatcttcttcccttgaatcattctattttcttgatgatcctcttctaagccctgccactccacttagattctc |
43533169 |
T |
|
| Q |
212 |
aggtgtcccattttcttgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533170 |
aggtgtcccattttcttgggaacatttacctggaattcccaagaaacacaataattccaagaaaaatcataaatcatccatgaaactattaccattaccc |
43533269 |
T |
|
| Q |
312 |
cctcctactattactacaagtactaccacacactcttctaaaaagcttaatcatgaagataccaagattaggaagaagaattcaattcaaagggatgatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533270 |
cctcctactattactacaagtactaccacacactcttctaaaaagcttaatcatgaagataccaagattaggaagaagaattcaattcaaagggatgatc |
43533369 |
T |
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| Q |
412 |
ctttctttgctgcaatggttaaatgctcaaaggatgatgatg |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533370 |
ctttctttgctgcaatggttaaatgctcaaaggatgatgatg |
43533411 |
T |
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