View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6658_low_4 (Length: 424)

Name: NF6658_low_4
Description: NF6658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6658_low_4
NF6658_low_4
[»] chr8 (12 HSPs)
chr8 (16-409)||(39785625-39786020)
chr8 (3-237)||(39791392-39791628)
chr8 (16-249)||(39795806-39796041)
chr8 (16-225)||(39777329-39777540)
chr8 (276-409)||(6863071-6863205)
chr8 (301-402)||(4472242-4472343)
chr8 (316-409)||(34018199-34018292)
chr8 (277-410)||(41957463-41957598)
chr8 (345-407)||(5654688-5654750)
chr8 (279-329)||(34856501-34856551)
chr8 (308-409)||(11109571-11109672)
chr8 (308-409)||(11595554-11595657)
[»] chr5 (3 HSPs)
chr5 (278-409)||(33155525-33155656)
chr5 (276-409)||(3769800-3769928)
chr5 (301-409)||(2818979-2819087)
[»] chr7 (2 HSPs)
chr7 (281-407)||(46981316-46981440)
chr7 (338-391)||(11457626-11457679)
[»] chr3 (7 HSPs)
chr3 (276-410)||(40386327-40386460)
chr3 (277-403)||(49596626-49596752)
chr3 (277-399)||(42347352-42347474)
chr3 (281-361)||(35052546-35052626)
chr3 (277-409)||(20753217-20753349)
chr3 (321-378)||(7882811-7882868)
chr3 (366-406)||(17105986-17106026)
[»] chr4 (3 HSPs)
chr4 (295-409)||(8482366-8482480)
chr4 (276-348)||(43405221-43405293)
chr4 (301-409)||(34113662-34113770)
[»] chr6 (1 HSPs)
chr6 (281-398)||(2188739-2188856)
[»] chr1 (3 HSPs)
chr1 (340-409)||(39742555-39742624)
chr1 (352-409)||(7890410-7890467)
chr1 (357-409)||(49920316-49920368)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 39786020 - 39785625
Alignment:
Q  16 acatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgcaagtggtaaggact 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  39786020 acatatgaaaagcagttccgtttcactttcttatggaaggtacagctgtatgagtcacaagataaatatgcatttgcattgtctgcaagtggtaaggact 39785921  T
Q  114 tgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785920 tgggtaaggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 39785821  T
Q  214 tacctgccatcaagaaaataaggagccaatgcaattgcagaaaatattagaggaactcaaagtaggctttgtccaacatacacaaggaaaatggtcttgc 313  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785820 tacctgccatcaagaaaataaggacccaatgcaattgtagaaaatattagaggaactcaaagtaggctttgtccaacatacacaaggaaaatggtcttgc 39785721  T
Q  314 atcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 409  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785720 atcatgcacaagtgtcctttgcgccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 39785625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 39791628 - 39791392
Alignment:
Q  3 aggaggagcacagacatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgca 100  Q
    ||||| || ||||| |||||||||||| |||| ||||||||||||||||||| |||||||||| |||| ||  |||||||| | |||| ||||||| ||     
T  39791628 aggagcagtacagatatatgaaaagcagttccatttcactttcttatggaagttacagctgtacgagttacaagataaataagtattttcattgtccgcg 39791529  T
Q  101 agtggtaaggacttgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtc 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39791528 agtggtaaggacttgggtagggaagccagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtc 39791429  T
Q  201 tattacctacatctacctgccatcaagaaaataagga 237  Q
    | |||||||||||||||| |||| ||||||| |||||    
T  39791428 ttttacctacatctacctaccattaagaaaaaaagga 39791392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 39796041 - 39795806
Alignment:
Q  16 acatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcacgata--aatatgcatttgcattgtctgcaagtggtaaggact 113  Q
    |||||||||||||| |||| ||||| |||||| ||| |  | ||||| || ||||||| | |  |||| |||  |||||||||||| |||||||||||||    
T  39796041 acatatgaaaagcagttccatttcagtttcttgtggtacttgcagctatacgagtcacaagacgaataagcaggtgcattgtctgctagtggtaaggact 39795942  T
Q  114 tgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 213  Q
    ||||||| ||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  39795941 tgggtagagaaaccagatgctgcagattaatggccaaccggttgcttcttttcccttccaattgtaatctaaggccagttactggcctaatgcctacatc 39795842  T
Q  214 tacctgccatcaagaaaataaggagccaatgcaatt 249  Q
    |||||| ||||||||||| ||| ||| |||||||||    
T  39795841 tacctgtcatcaagaaaaaaagaagctaatgcaatt 39795806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 39777540 - 39777329
Alignment:
Q  16 acatatgaaaagcaattccgtttcactttcttatggaaggtacagctgtatgagtcac--gataaatatgcatttgcattgtctgcaagtggtaaggact 113  Q
    ||||||||||||||  ||| ||||||||||||||||||  | ||||| || |||||||  || ||||| |||||||| |||||||| |||||||||||||    
T  39777540 acatatgaaaagcagctccatttcactttcttatggaaattgcagctataggagtcacaagacaaataggcatttgcgttgtctgcgagtggtaaggact 39777441  T
Q  114 tgggtagggaagctagatgctgcagatgaatggccaaccggttgcttctactcccttccaattgtaatctaaggccagttactggtctattacctacatc 213  Q
    | ||||  ||||  |||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  39777440 ttggtaaagaagtcagatgctgaaggtgaatggccaaccggttgcttcttctcccttccaattgtaatctcaggccaattactggtctattaccaacatc 39777341  T
Q  214 tacctgccatca 225  Q
    ||||| ||||||    
T  39777340 taccttccatca 39777329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 6863205 - 6863071
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattag-ttcaaaaagtcatatcatttctcatttaatt 374  Q
    ||||||||||| ||||| |||||| |||||||||||||| |||||||||||| | ||| ||||||||| |  ||||||||| ||||| | ||||||||||    
T  6863205 taggctttgtctaacatgcacaagcaaaatggtcttgcaccatgcacaagtgccttttccaccattagataaaaaaagtcacatcatatttcatttaatt 6863106  T
Q  375 taattgtgggatttattgatccaatggtgaaaact 409  Q
    |||| ||| |||||||||||||||||||| |||||    
T  6863105 taatggtgagatttattgatccaatggtggaaact 6863071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 4472242 - 4472343
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    ||||||||||||||||||||||||||||| ||| ||| | | | |||| |||||||||||| ||||||||||||||| |||  |||||||||||| ||||    
T  4472242 aaaatggtcttgcatcatgcacaagtgtctttttcactaatggatcaataagtcatatcatatctcatttaatttaaatgtaagatttattgatctaatg 4472341  T
Q  401 gt 402  Q
    ||    
T  4472342 gt 4472343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 409
Target Start/End: Original strand, 34018199 - 34018292
Alignment:
Q  316 catgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 409  Q
    |||||||||||  | ||| ||||||  | ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  34018199 catgcacaagtaactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaatggtggaatttattgatccaatggtaaaaact 34018292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 410
Target Start/End: Original strand, 41957463 - 41957598
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcc--tttgcaccattagttcaaaaagtcatatcatttctcatttaatt 374  Q
    |||| ||||| ||||| |||||| |||||||||||||| ||||||||| ||||   ||| |  |||| | | ||||||||||||||| | | ||||||||    
T  41957463 aggccttgtctaacatgcacaagtaaaatggtcttgcaccatgcacaaatgtctaatttccgtcattggattaaaaagtcatatcatattttatttaatt 41957562  T
Q  375 taattgtgggatttattgatccaatggtgaaaactg 410  Q
    |||| |||  |||||||||| |||||||| ||||||    
T  41957563 taatcgtgaaatttattgattcaatggtggaaactg 41957598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 407
Target Start/End: Original strand, 5654688 - 5654750
Alignment:
Q  345 tcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaa 407  Q
    |||| |||||||||||| |||||||||||||||| |||| ||||||| ||| | |||||||||    
T  5654688 tcaataagtcatatcatatctcatttaatttaatagtggaatttatttatcaagtggtgaaaa 5654750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 34856551 - 34856501
Alignment:
Q  279 gctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtc 329  Q
    |||||||| ||||| |||||| ||||| |||||||| ||||||||||||||    
T  34856551 gctttgtctaacatgcacaagcaaaatagtcttgcaccatgcacaagtgtc 34856501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 409
Target Start/End: Original strand, 11109571 - 11109672
Alignment:
Q  308 tcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaa 407  Q
    ||||||||||||||||| | ||||||  || ||| | ||||  | ||||||||| || ||||||||||||| || | |||||||||||| | | ||||||    
T  11109571 tcttgcatcatgcacaaatatcctttttactatttgatcaatcaatcatatcatatcccatttaatttaatagtagaatttattgatcctacgatgaaaa 11109670  T
Q  408 ct 409  Q
    ||    
T  11109671 ct 11109672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 409
Target Start/End: Original strand, 11595554 - 11595657
Alignment:
Q  308 tcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtg--ggatttattgatccaatggtgaa 405  Q
    ||||||||||||||||| | ||||||  || ||| | ||||  | ||||||||| || ||||||||||||  |||  | |||||||||||||||| ||||    
T  11595554 tcttgcatcatgcacaaatatcctttttactatttgatcaatcattcatatcatatcccatttaatttaaaagtgtagaatttattgatccaatgatgaa 11595653  T
Q  406 aact 409  Q
    ||||    
T  11595654 aact 11595657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 278 - 409
Target Start/End: Original strand, 33155525 - 33155656
Alignment:
Q  278 ggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaa 377  Q
    ||||||||  ||||| |||||| ||||||||| |||| |||||||||||| | ||| ||||||  | ||||||||||| |||||||||||||||||||||    
T  33155525 ggctttgtttaacatgcacaagcaaaatggtcctgcaccatgcacaagtgactttttcaccatcggatcaaaaagtcaaatcatttctcatttaatttaa 33155624  T
Q  378 ttgtgggatttattgatccaatggtgaaaact 409  Q
    | ||||||||||||||||||||||||||||||    
T  33155625 tggtgggatttattgatccaatggtgaaaact 33155656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 409
Target Start/End: Original strand, 3769800 - 3769928
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattt 375  Q
    |||||||||||  ||||||||||| |||||| ||||||| ||||||||||||| |||| ||||||| | |||| |||||||||||| |||||||| || |    
T  3769800 taggctttgtctcacatacacaagtaaaatg-tcttgcaccatgcacaagtgttcttttcaccattggatcaacaagtcatatcatatctcatttgatct 3769898  T
Q  376 aattgtgggatttattgatccaatggtgaaaact 409  Q
    ||| |||||    |||| ||||||||||||||||    
T  3769899 aatggtggg----attggtccaatggtgaaaact 3769928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 2819087 - 2818979
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    |||||||||||||| |||||||||  ||| |||  || ||| | |||| ||||   ||||| | ||||||||| |||| ||| |||||||||||||||||    
T  2819087 aaaatggtcttgcaccatgcacaaacgtcttttttactattggatcaataagttgcatcatatttcatttaatctaatggtgagatttattgatccaatg 2818988  T
Q  401 gtgaaaact 409  Q
     ||||||||    
T  2818987 atgaaaact 2818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 46981316 - 46981440
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| ||||| ||||||  ||||||||||||| |||||||||||| | ||| ||||||| | |||||||||||||  |||||||| |||||||||| |    
T  46981316 tttgtctaacatgcacaagctaaatggtcttgcaccatgcacaagtgccgttttcaccattggatcaaaaagtcata--atttctcaattaatttaatgg 46981413  T
Q  381 tgggatttattgatccaatggtgaaaa 407  Q
    ||  | |||||||||||||||||||||    
T  46981414 tgtaaattattgatccaatggtgaaaa 46981440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 11457679 - 11457626
Alignment:
Q  338 cattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttatt 391  Q
    |||||| ||||||||||| |||| ||||||||||||||||| |||| |||||||    
T  11457679 cattagatcaaaaagtcacatcacttctcatttaatttaatggtggaatttatt 11457626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 410
Target Start/End: Complemental strand, 40386460 - 40386327
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattt 375  Q
    ||||||||||| ||||| || ||  |||| ||| ||||| |||||||||||||| ||||||||||| | |||||| |||| || |||  |||||||||||    
T  40386460 taggctttgtctaacatgcaaaaacaaaaaggttttgcaccatgcacaagtgtcttttgcaccattggatcaaaa-gtcacataattattcatttaattt 40386362  T
Q  376 aattgtgggatttattgatccaatggtgaaaactg 410  Q
    ||| ||| |||||||||||||||||||| ||||||    
T  40386361 aatagtgagatttattgatccaatggtggaaactg 40386327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 49596626 - 49596752
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    |||||||||| |||||  ||||| ||||| ||||| ||||||||||| ||||| ||| || |||||| | ||||||||| ||||| | || |||||||||    
T  49596626 aggctttgtctaacatggacaagcaaaatagtcttacatcatgcacacgtgtcatttccatcattagattaaaaagtcacatcatatttcgtttaattta 49596725  T
Q  377 attgtgggatttattgatccaatggtg 403  Q
    || ||| ||||||||| | ||||||||    
T  49596726 atagtgagatttattggttcaatggtg 49596752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 399
Target Start/End: Complemental strand, 42347474 - 42347352
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    |||||||||| ||  | |||||| |||||||||||||| |||| | ||||||||||| ||||||| | | || |||||  ||||| |||||| |||||||    
T  42347474 aggctttgtctaaattgcacaagcaaaatggtcttgcaccatgaataagtgtccttttcaccattggattaataagtcgcatcatatctcatataattta 42347375  T
Q  377 attgtgggatttattgatccaat 399  Q
    ||  || ||||||||||||||||    
T  42347374 atgatgagatttattgatccaat 42347352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 35052626 - 35052546
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcat 361  Q
    |||||| ||||| |||||| |||||| | |||||||||||||||||||| ||| ||||||| | ||||||||||| |||||    
T  35052626 tttgtctaacatgcacaagcaaaatgatattgcatcatgcacaagtgtcttttccaccattggatcaaaaagtcacatcat 35052546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 409
Target Start/End: Complemental strand, 20753349 - 20753217
Alignment:
Q  277 aggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaattta 376  Q
    ||||||||||  |||| |||||| ||||||||||| || | || |||| |||| ||| ||||||| ||||||||||||| || || | |||||| |||||    
T  20753349 aggctttgtcttacatgcacaagtaaaatggtcttccaccgtgtacaaatgtcttttccaccattggttcaaaaagtcacattatatttcatttcattta 20753250  T
Q  377 attgtgggatttattgatccaatggtgaaaact 409  Q
    |   || ||||||||||||| ||| || |||||    
T  20753249 acgatgagatttattgatccgatgatggaaact 20753217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 7882811 - 7882868
Alignment:
Q  321 acaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaat 378  Q
    ||||||||| |||  || ||||| || |||||| ||||||||||||||||||||||||    
T  7882811 acaagtgtcgtttttactattagatccaaaagttatatcatttctcatttaatttaat 7882868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 17106026 - 17105986
Alignment:
Q  366 catttaatttaattgtgggatttattgatccaatggtgaaa 406  Q
    ||||||||||||| ||||| |||||| ||||||||||||||    
T  17106026 catttaatttaatggtgggttttattaatccaatggtgaaa 17105986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 8482480 - 8482366
Alignment:
Q  295 acaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgat 394  Q
    ||||| ||||||||||||||  ||||||||| |||   | ||||||||| |||||||||||| |||| | |||||||||||||| |||  |||||||||     
T  8482480 acaagaaaaatggtcttgcactatgcacaagcgtctgatccaccattagatcaaaaagtcatgtcatatttcatttaatttaatggtgaaatttattgaa 8482381  T
Q  395 ccaatggtgaaaact 409  Q
    |||||||||||||||    
T  8482380 ccaatggtgaaaact 8482366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 43405293 - 43405221
Alignment:
Q  276 taggctttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaa 348  Q
    |||| |||||| |||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| ||||    
T  43405293 taggttttgtctaacatacacaagtaaaatgatcttgcatcatgcacaagtatccttttcaccattagatcaa 43405221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 34113770 - 34113662
Alignment:
Q  301 aaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatg 400  Q
    ||||| |||||||||||||||||||| || |||  | |||| | |||| |||||| ||||| | |||||||||||||| ||| ||||||||||| |||||    
T  34113770 aaaattgtcttgcatcatgcacaagtatcatttatatcatttgatcaataagtcacatcatatatcatttaatttaatagtgagatttattgattcaatg 34113671  T
Q  401 gtgaaaact 409  Q
     | ||||||    
T  34113670 ataaaaact 34113662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 2188856 - 2188739
Alignment:
Q  281 tttgtccaacatacacaaggaaaatggtcttgcatcatgcacaagtgtcctttgcaccattagttcaaaaagtcatatcatttctcatttaatttaattg 380  Q
    |||||| |||||||| |||||||||| |||| | ||||| |||| |||  ||| ||  |||   | ||||| ||||||||| | ||||||||||||||||    
T  2188856 tttgtctaacatacataaggaaaatgatcttacttcatggacaaatgttttttccaaaattgaattaaaaaatcatatcatatttcatttaatttaattg 2188757  T
Q  381 tgggatttattgatccaa 398  Q
    |  |||||||||||||||    
T  2188756 taagatttattgatccaa 2188739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 39742624 - 39742555
Alignment:
Q  340 ttagttcaaaaagtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 409  Q
    |||| |||| ||||||| |||| | |||||||||||||| |||||||||||||||| || ||| ||||||    
T  39742624 ttagatcaataagtcatgtcatatttcatttaatttaatggtgggatttattgatctaagggtaaaaact 39742555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 7890467 - 7890410
Alignment:
Q  352 gtcatatcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 409  Q
    |||| ||||| | |||||||||||||| |||  ||||||||||||||| |||||||||    
T  7890467 gtcacatcatatttcatttaatttaatggtgaaatttattgatccaatagtgaaaact 7890410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 49920368 - 49920316
Alignment:
Q  357 atcatttctcatttaatttaattgtgggatttattgatccaatggtgaaaact 409  Q
    ||||| |||||||| ||||||| ||| |||||||||||||||| ||| |||||    
T  49920368 atcatatctcatttgatttaatggtgtgatttattgatccaattgtggaaact 49920316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University