View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6658_low_5 (Length: 368)

Name: NF6658_low_5
Description: NF6658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6658_low_5
NF6658_low_5
[»] chr3 (1 HSPs)
chr3 (167-356)||(15750891-15751080)
[»] chr8 (2 HSPs)
chr8 (229-356)||(4032996-4033123)
chr8 (183-216)||(15853936-15853969)
[»] chr7 (4 HSPs)
chr7 (229-356)||(48919041-48919168)
chr7 (179-275)||(21517777-21517873)
chr7 (182-216)||(12965735-12965769)
chr7 (182-216)||(12965819-12965853)
[»] chr2 (2 HSPs)
chr2 (229-356)||(38453122-38453249)
chr2 (229-356)||(45368126-45368252)
[»] chr1 (2 HSPs)
chr1 (231-304)||(51234319-51234392)
chr1 (236-355)||(19936175-19936295)
[»] chr5 (2 HSPs)
chr5 (236-356)||(3394363-3394483)
chr5 (229-337)||(36200454-36200562)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 167 - 356
Target Start/End: Complemental strand, 15751080 - 15750891
Alignment:
Q  167 tcttgatatatattttccttcaacttgagtggtagtttcgtatcacataagacttccaagattcttcttcatttcaaccacctaacatgagtatgatgtt 266  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15751080 tcttgatatatattttccttcaacttgagtggtagttttgtatcacataaaacttccaagattcttcttcatttcaaccacctaacatgagtatgatgtt 15750981  T
Q  267 ttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgtaatttgaggtgtcatacgatctccaactt 356  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  15750980 ttacatatgcttcgatgtctccttcgttttgcattatgaacccaaaatgtttaaatcatgtaatttgagatgtcatatgatctccaactt 15750891  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 4032996 - 4033123
Alignment:
Q  229 tcttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgta 328  Q
    |||||| ||||||||||||| ||| ||| ||||||| |||||||||||||  || ||||| || || || | |||||| |||| ||  ||||| ||||||    
T  4032996 tcttctccatttcaaccacccaacttgaatatgatgatttacatatgcttttatttctccatcattgtgtactatgaacccaagatacttaaaccgtgta 4033095  T
Q  329 atttgaggtgtcatacgatctccaactt 356  Q
    | ||| ||| | ||| ||||||||||||    
T  4033096 acttggggtatgatatgatctccaactt 4033123  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 15853936 - 15853969
Alignment:
Q  183 ccttcaacttgagtggtagtttcgtatcacataa 216  Q
    |||||||||||||||||| |||||||||||||||    
T  15853936 ccttcaacttgagtggtactttcgtatcacataa 15853969  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 48919168 - 48919041
Alignment:
Q  229 tcttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgta 328  Q
    |||||| ||||||||| ||| | | ||| || |||| || ||||||||||| || ||||| || ||||| | |||| ||||||||| |||||| ||||||    
T  48919168 tcttctccatttcaactacccagcttgaatacgatgattcacatatgcttctatttctccgtcattttgtactatggatccaaaatatttaaaccgtgta 48919069  T
Q  329 atttgaggtgtcatacgatctccaactt 356  Q
    | ||| ||||| ||| ||||||| ||||    
T  48919068 acttggggtgtaatatgatctcctactt 48919041  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 21517777 - 21517873
Alignment:
Q  179 ttttccttcaacttgagtggtagtttcgtatcacataagacttccaagattcttcttcatttcaaccacctaacatgagtatgatgttttacatatg 275  Q
    |||||||||||||||||| ||| ||| |||| |||| | || || |||  ||||||  |||||||||||| ||| ||| ||||||| ||||||||||    
T  21517777 ttttccttcaacttgagttgtatttttgtattacattaaacatctaaggctcttctcgatttcaaccacccaacttgaatatgatgatttacatatg 21517873  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 12965769 - 12965735
Alignment:
Q  182 tccttcaacttgagtggtagtttcgtatcacataa 216  Q
    ||||||||||||||||||| |||||||||||||||    
T  12965769 tccttcaacttgagtggtattttcgtatcacataa 12965735  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 12965853 - 12965819
Alignment:
Q  182 tccttcaacttgagtggtagtttcgtatcacataa 216  Q
    ||||||||||||||||||| |||||||||||||||    
T  12965853 tccttcaacttgagtggtactttcgtatcacataa 12965819  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 38453122 - 38453249
Alignment:
Q  229 tcttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgta 328  Q
    |||||| ||||||||||||| | | ||| |||||||  ||||||||||||| || ||||| || ||||| || | | | |||| || |||||||||||||    
T  38453122 tcttctccatttcaaccacccagcttgaatatgatggcttacatatgcttctatttctccgtcattttgtatgaaggacccaagatatttaaatcgtgta 38453221  T
Q  329 atttgaggtgtcatacgatctccaactt 356  Q
    | ||| ||| | ||| ||||||||||||    
T  38453222 acttggggtatgatatgatctccaactt 38453249  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 45368126 - 45368252
Alignment:
Q  229 tcttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgta 328  Q
    |||||| ||||||||||||| | | ||| || |||  ||||||| |||||| || ||||| || ||||| |||||| | |||| || |||||| ||||||    
T  45368126 tcttctccatttcaaccacccagcttgaatacgataatttacatctgcttctatttctccatcattttgtattatggacccaagatatttaaaccgtgta 45368225  T
Q  329 atttgaggtgtcatacgatctccaactt 356  Q
    ||||| ||| | ||| ||||||||||||    
T  45368226 atttg-ggtatgatatgatctccaactt 45368252  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 51234392 - 51234319
Alignment:
Q  231 ttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatg 304  Q
    |||| ||||||||||||| ||| ||| | ||||| ||||||| ||||||||| ||||| || ||||||| ||||    
T  51234392 ttctccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttgcactatg 51234319  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 19936295 - 19936175
Alignment:
Q  236 catttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttc-gttttgcattatgaatccaaaatgtttaaatcgtgtaatttga 334  Q
    ||||||||||||| | | ||| || |||| |||||||||||||| || ||||||||  ||||| |||||| | |||| || |||||| | ||||| |||     
T  19936295 catttcaaccacccagcttgaatacgatgatttacatatgcttctatttctccttcatttttgtattatggacccaagatatttaaaccatgtaacttgg 19936196  T
Q  335 ggtgtcatacgatctccaact 355  Q
    ||| | ||| |||||||||||    
T  19936195 ggtatgatatgatctccaact 19936175  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 356
Target Start/End: Complemental strand, 3394483 - 3394363
Alignment:
Q  236 catttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgtaatttgag 335  Q
    ||||||||||||| | | ||| || |||| ||||||| |||||| || ||||| || ||||| | |||| | |||| || |||||| ||||||| ||| |    
T  3394483 catttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagatatttaaaccgtgtaacttggg 3394384  T
Q  336 gtgtcatacgatctccaactt 356  Q
    || | ||| ||||||||||||    
T  3394383 gtatgatatgatctccaactt 3394363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 36200562 - 36200454
Alignment:
Q  229 tcttcttcatttcaaccacctaacatgagtatgatgttttacatatgcttcaatgtctccttcgttttgcattatgaatccaaaatgtttaaatcgtgta 328  Q
    |||||| ||||||||||||| ||| | | ||||||| |||||||||||| | || |||   || ||||| | |||||| ||||||| ||||||  |||||    
T  36200562 tcttctccatttcaaccacccaacttaaatatgatgatttacatatgctactatttctatgtcattttgtactatgaacccaaaatatttaaacggtgta 36200463  T
Q  329 atttgaggt 337  Q
    | |||||||    
T  36200462 acttgaggt 36200454  T

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