View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6659_high_1 (Length: 1074)
Name: NF6659_high_1
Description: NF6659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6659_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 911; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 911; E-Value: 0
Query Start/End: Original strand, 1 - 1058
Target Start/End: Original strand, 39395608 - 39396663
Alignment:
| Q |
1 |
acatgataacaccacataagcagcaacacaaaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395608 |
acatgataacaccacataagcagcaacacaaaggggggaataatgaagaggttgttaataaagaaattattgtagaagatgatacactaaagggttcaat |
39395707 |
T |
|
| Q |
101 |
atttgatgaagtggaggacgattcacctgattcagaaacacatgttgaaatgggaattcatgatgactttgatcatttagatgaatcacattttgatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
39395708 |
atttgatgaagtggaggacgattcacctgattcagaaacacatgttgaaatgggaattcatgaagattttgatcatttagatgaatcacattttgatgat |
39395807 |
T |
|
| Q |
201 |
tctgaggctgatagaaacaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagnnnnnnnnnnnnnnnnnataataata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39395808 |
tctgaggctgatagaaacaacagaaaaagtaaagcattgctgagaagatttggtgatcttataaggagaaaaagtactactactgctactaataataata |
39395907 |
T |
|
| Q |
301 |
cccgaaaagaacttcccaatgaagaacatctacaaacgtaatgcaaattacacagtgactaaatacaattagactgtaatattgttcatattgttttact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39395908 |
cccgaaaagaacttcccaatgaagaacatctacaaacgtaatgcaaattacacagtgactaaatacaattagactgtaatactgttcatattgttttact |
39396007 |
T |
|
| Q |
401 |
ttgtgcatttgtttaatgtgtacataatttttgtttnnnnnnnnntgtgtacatagtttcacagattatacgtacacctattttgagaccctatttcgtg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396008 |
ttgtgcatttgtttaatgtgtacataatttttgtttaaaaaaaa-tgtgtacataatttcacagattatacgtacacctattttgagaccctatttcgtg |
39396106 |
T |
|
| Q |
501 |
tctgtttgtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaactaaaacaatcatttagaccacctaag |
600 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396107 |
tctgttggtttcttctattttatttgtttgaatacctgtttgaaaagtggcgtataatttcccccaaatcaaactaaaacaatcatttagaccacctaag |
39396206 |
T |
|
| Q |
601 |
acgaattagaaaatactctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgatacgaaaaagtaccacacaacaatgaga |
700 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39396207 |
acgaattagaaaataccctaaaaggtcatccttatttgggacatttgaatgaagaggaaaaatagattatgatacgaaaaagtaccacatgacaatgaga |
39396306 |
T |
|
| Q |
701 |
ttcatatttggtacattgaaagattgaacaaagataatctcacgtgtactacccaaatataagggcatggagtacttatcaatcttctttgagagtttct |
800 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396307 |
ttcatatctggtacattgaaagattgaacaaagataatctcacgtgtactacccaaatataa-ggcatggagtacttatcaatcttctttgagagtttct |
39396405 |
T |
|
| Q |
801 |
tacacaacaatgcagcagctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggaggacttggatgctgcgagtgccgtatttt |
900 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
39396406 |
tacacaaaaatgcagcagctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggaggacttggatgttgcaagtgccgtatttt |
39396505 |
T |
|
| Q |
901 |
ggacaaatcttgattcagtaaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggtacaaacaaccattgcttaaaattgtt |
1000 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396506 |
ggacacatcttgattcagtgaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggtacaaacaaccattgcttaaaattgtt |
39396605 |
T |
|
| Q |
1001 |
gatgtaacatctacaaagttatctttttcggcagcttttgcttatttggaacatgaac |
1058 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396606 |
gatgtaacatctacaaagttatctttttcggcagcttttgcttatttggaacatgaac |
39396663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 982 - 1056
Target Start/End: Original strand, 43598128 - 43598202
Alignment:
| Q |
982 |
accattgcttaaaattgttgatgtaacatctacaaagttatctttttcggcagcttttgcttatttggaacatga |
1056 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||| | |||| || |||||||||||||||||||||||| |
|
|
| T |
43598128 |
accattgctttaaattgttagcgtaacatctatgaagttaacgtttttggtagcttttgcttatttggaacatga |
43598202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 835
Target Start/End: Original strand, 43597914 - 43597970
Alignment:
| Q |
776 |
ttatcaatcttctttgagagtttcttacacaacaatgcagcagctattgaacttaataga |
835 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43597914 |
ttatcgatcttctttgagaggttcttacacaaaaat---gcagctattgaacttaataga |
43597970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 790
Target Start/End: Complemental strand, 37104369 - 37104294
Alignment:
| Q |
716 |
ttgaaagattgaacaaagataatctcacgtgtactacccaaatata-agggcatggagtacttatcaatcttcttt |
790 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||| ||||| || || |||||||| |||||||||||||| ||||| |
|
|
| T |
37104369 |
ttgaaagatcgaacaaagataatcttgcatgtaccacccatatttatagggcatgaagtacttatcaatcatcttt |
37104294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University