View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6659_high_9 (Length: 277)

Name: NF6659_high_9
Description: NF6659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6659_high_9
NF6659_high_9
[»] chr3 (2 HSPs)
chr3 (18-266)||(11035856-11036104)
chr3 (60-237)||(8376948-8377123)
[»] chr1 (5 HSPs)
chr1 (32-228)||(33885470-33885671)
chr1 (32-228)||(33958581-33958782)
chr1 (60-225)||(22362181-22362350)
chr1 (122-237)||(41314883-41314999)
chr1 (60-150)||(41314792-41314882)
[»] chr5 (2 HSPs)
chr5 (60-237)||(37807056-37807234)
chr5 (60-224)||(37627927-37628091)
[»] chr7 (5 HSPs)
chr7 (65-237)||(1609371-1609544)
chr7 (60-237)||(19633453-19633633)
chr7 (65-225)||(2186518-2186679)
chr7 (27-237)||(21270469-21270683)
chr7 (57-237)||(48189374-48189552)
[»] chr2 (1 HSPs)
chr2 (77-238)||(19214854-19215016)
[»] chr8 (3 HSPs)
chr8 (60-237)||(7098411-7098593)
chr8 (89-237)||(29821142-29821291)
chr8 (60-237)||(7094678-7094853)
[»] scaffold0627 (1 HSPs)
scaffold0627 (18-225)||(3296-3505)
[»] scaffold0042 (2 HSPs)
scaffold0042 (18-237)||(6381-6601)
scaffold0042 (18-237)||(13793-14013)
[»] chr6 (1 HSPs)
chr6 (135-212)||(34519149-34519226)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 11035856 - 11036104
Alignment:
Q  18 aattcaatcaagaccaagtcatttttctttatcacaattggcataaatagttataggatacactatataataattagtctaatggattttggctatataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035856 aattcaatcaagaccaagtcatttttctttatcacaattggcataaatagttataggatacactatataataattagtctaatggattttggctatataa 11035955  T
Q  118 tttgaaagaaaaatacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035956 tttgaaagaaaaatacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatga 11036055  T
Q  218 taaaatactgggttcttacagtcatcttcatggtctctatcacacttca 266  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11036056 taaaatattgggttcttacagtcatcttcatggtctctatcacacttca 11036104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 8377123 - 8376948
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaaga-aaaatacaaaata--atattatcactcaataa 156  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||| |||| ||||||||  |||||||||||||||||    
T  8377123 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaataa 8377024  T
Q  157 atcac-aaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    ||||| |||||||||||||||      ||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  8377023 atcacaaaggtaaattatttt------aaagtaagataaaataatttagaataaaaatatgataaaataccgggatcttaca 8376948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 33885671 - 33885470
Alignment:
Q  32 caagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaa 128  Q
    ||||||||||||||||||||||||    |||||||||| ||||||| |||||||| |||||| ||||  |||||||||||||||||||||||||||||||    
T  33885671 caagtcatttttctttatcacaataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaagaaa 33885572  T
Q  129 aatacaaaataatattatcactcaataaatcac-aaggtaaattattttaatgtc-aaattaagataacataatttagaataaaaatatgataaaatact 226  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  33885571 aatacagaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaaattaagataaaataatttaaaataaaaatatgataaaatact 33885472  T
Q  227 gg 228  Q
    ||    
T  33885471 gg 33885470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 33958581 - 33958782
Alignment:
Q  32 caagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaa 128  Q
    ||||||||||||||||||||||||    |||||||||| ||||||| |||||||| |||||| ||||  |||||||||||||||||||||||||||||||    
T  33958581 caagtcatttttctttatcacaataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaagaaa 33958680  T
Q  129 aatacaaaataatattatcactcaataaatcac-aaggtaaattattttaatgtc-aaattaagataacataatttagaataaaaatatgataaaatact 226  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  33958681 aatacagaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaaattaagataaaataatttaaaataaaaatatgataaaatact 33958780  T
Q  227 gg 228  Q
    ||    
T  33958781 gg 33958782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 22362350 - 22362181
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaata-caaaataatat--tatcactcaataa 156  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||| | |||||||||||  |||||||||||||    
T  22362350 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaataa 22362251  T
Q  157 atcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatac 225  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  22362250 atcacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaatac 22362181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 41314883 - 41314999
Alignment:
Q  122 aaagaaaaatacaaaataatattatcactcaataaatcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  41314883 aaagaaaaatacaaaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataa 41314982  T
Q  221 aatactgggttcttaca 237  Q
    ||||| ||| |||||||    
T  41314983 aataccgggatcttaca 41314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 41314792 - 41314882
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcact 150  Q
    ||||||||||||||| ||| | || ||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  41314792 ataaatagttatagggtaccccatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaataatattatcact 41314882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 37807056 - 37807234
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatc 159  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  37807056 ataaatagttataggttacactatttaataattaatataatgaattttggctatatacttcgaaagaaaaatacaaaataatattatcactcaataaatc 37807155  T
Q  160 a-caaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    |  ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  37807156 ataaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgggatcttaca 37807234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 224
Target Start/End: Original strand, 37627927 - 37628091
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatc 159  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  37627927 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatgcaaaataatattatcactcaataaatc 37628026  T
Q  160 acaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaata 224  Q
    |||| |  ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  37628027 acaaaggtaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaata 37628091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 1609371 - 1609544
Alignment:
Q  65 tagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatcac-aa 163  Q
    |||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||    
T  1609371 tagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaataaaattatcattcaataaatcacaaa 1609470  T
Q  164 ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  1609471 ggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgggatcttaca 1609544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 19633453 - 19633633
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataa--tttgaaagaaaaatacaaaataatattatcactcaataaa 157  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  19633453 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatatactttgaaagaaaaatacaaaataatattatcactcaataaa 19633552  T
Q  158 tcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    | |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  19633553 ttacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgggatcttaca 19633633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 2186679 - 2186518
Alignment:
Q  65 tagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatcac-aa 163  Q
    |||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||    
T  2186679 tagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaataatattatcacttaataaatcacaaa 2186580  T
Q  164 ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatac 225  Q
    | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2186579 gataaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaatac 2186518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 21270469 - 21270683
Alignment:
Q  27 aagaccaagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaa 123  Q
    |||| |||||||||||||||||||| |||    |||||||||||||||||| |||| ||| ||||||||    |||||||||||||||||||| ||||||    
T  21270469 aagatcaagtcatttttctttatcataataataggcataaatagttatagggtacattatttaataattg---taatggattttggctatatactttgaa 21270565  T
Q  124 agaaaaatacaaaataata---ttatcactcaataaatcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgata 219  Q
    |||||||||| ||||||||   |||||| ||||||||| |||| ||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||    
T  21270566 agaaaaatactaaataataatattatcattcaataaattacaaaggtaaattattttaaagtcaacttaagataaaataatctagaataaaaatatgata 21270665  T
Q  220 aaatactgggttcttaca 237  Q
    |||||| ||| |||||||    
T  21270666 aaataccgggatcttaca 21270683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 48189374 - 48189552
Alignment:
Q  57 ggcataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataata---ttatcactcaa 153  Q
    |||||||||||||||||| |||||||| ||||      | |||| ||||||||||||||| |||||||||||||||||||||||||   |||||||||||    
T  48189374 ggcataaatagttatagggtacactatttaat------tgtaatagattttggctatatactttgaaagaaaaatacaaaataataatattatcactcaa 48189467  T
Q  154 taaatcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||    
T  48189468 taaatcacaaaggtaaattattttaaagtcaaattaagataaaataatctagaataaaaatatgataaaataccgggatcttaca 48189552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 19215016 - 19214854
Alignment:
Q  77 acactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatc-acaaggtaaattattt 175  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||    
T  19215016 acactatttaataattagtataatgaattttggctatataatttgaaagaaaaatacaaaataatattatcattcaataaatcaaaaaggtaaattattt 19214917  T
Q  176 taatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttacag 238  Q
    |||  ||||| |||||||| |||||||||||||||||||||||||||||  ||| ||||||||    
T  19214916 taaaatcaaagtaagataaaataatttagaataaaaatatgataaaatatcgggatcttacag 19214854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 7098411 - 7098593
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaata--caaaataatat--tatcactcaata 155  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||| |  |||||||||||  ||||||||||||    
T  7098411 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaaacaaaataatatattatcactcaata 7098510  T
Q  156 aatcacaa-ggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||    
T  7098511 aatcacaaaggtaaattattttaaagtcaaattaagataaaataatttaaaataaaaatatgataaaataccgggatcttaca 7098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 29821291 - 29821142
Alignment:
Q  89 aattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactcaataaatcac-aaggtaaattattttaatgtcaaatt 187  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| |    
T  29821291 aattagtataatgaattttggctatataatttgaaagtaaaatacaaaataatattatcactcaataaatcacaaaggtaaattattttaaaatcaaagt 29821192  T
Q  188 aagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    ||||||| |||||||| ||||||||||||||||||||  ||| |||||||    
T  29821191 aagataaaataatttaaaataaaaatatgataaaatatcgggatcttaca 29821142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 7094678 - 7094853
Alignment:
Q  60 ataaatagttataggatacactatataataattagtctaatggattttggctatataatttgaaag-aaaaatacaaaata--atattatcactcaataa 156  Q
    ||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| ||||||||  |||||||||||||||||    
T  7094678 ataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaaaaacaaaataatatattatcactcaataa 7094777  T
Q  157 atcac-aaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatactgggttcttaca 237  Q
    ||||| |||||||||||||||      ||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  7094778 atcacaaaggtaaattatttt------aaagtaagataaaataatttagaataaaaatatgataaaataccgggatcttaca 7094853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 3296 - 3505
Alignment:
Q  18 aattcaatcaagaccaagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctata 114  Q
    |||| ||| ||||||||||||| ||| ||||||| |||    ||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||||    
T  3296 aattgaatgaagaccaagtcatatttgtttatcataataataggcttaaatagttataaggtacactatttaataattagtataatggattttggctata 3395  T
Q  115 taatttgaaagaaaaatacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaata 214  Q
    |||||  |||||||| |||||||||||||||| | ||||||||||| || || || |||||||||||||| ||||||||| ||||||||||||||||||     
T  3396 taattccaaagaaaa-tacaaaataatattataaatcaataaatcagaaagtcaactattttaatgtcaagttaagataaaataatttagaataaaaatc 3494  T
Q  215 tgataaaatac 225  Q
     ||||||||||    
T  3495 agataaaatac 3505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 6381 - 6601
Alignment:
Q  18 aattcaatcaagaccaagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctata 114  Q
    |||| ||| ||||||||||||| ||||||||||| |||    ||| |||||||||||| | |||||||| ||||||||||| ||||||||||||||||||    
T  6381 aattgaatgaagaccaagtcatatttctttatcataataataggcttaaatagttataaggtacactat-taataattagtgtaatggattttggctata 6479  T
Q  115 taatttgaaagaaaaatacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaata 214  Q
    |||||  |||||||| |||||||||||||||||| ||||||||||| || || || |||||||||||||| | ||||||| ||||||||||||||||||     
T  6480 taattccaaagaaaa-tacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatt 6578  T
Q  215 tgataaaatactgggttcttaca 237  Q
     |||||||||  ||| |||||||    
T  6579 agataaaatatcgggatcttaca 6601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 13793 - 14013
Alignment:
Q  18 aattcaatcaagaccaagtcatttttctttatcacaatt---ggcataaatagttataggatacactatataataattagtctaatggattttggctata 114  Q
    |||| ||| ||||||||||||| ||||||||||| |||    ||| |||||||||||| | |||||||| |||||||||||  |||||||||||||||||    
T  13793 aattgaatgaagaccaagtcatatttctttatcataataataggcttaaatagttataaggtacactat-taataattagtgaaatggattttggctata 13891  T
Q  115 taatttgaaagaaaaatacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaata 214  Q
    |||||  |||||||| |||||||||||||||||| ||||||||||| || || || |||||||||||||| | ||||||| |||||||||||||||||||    
T  13892 taattccaaagaaaa-tacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaata 13990  T
Q  215 tgataaaatactgggttcttaca 237  Q
     || ||||||  ||| |||||||    
T  13991 agaaaaaatatcgggatcttaca 14013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 34519149 - 34519226
Alignment:
Q  135 aaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaa 212  Q
    ||||||||| |||||||||||||||| | | |||| |||||| | ||||||||| ||||| ||| || || |||||||    
T  34519149 aaataatatcatcactcaataaatcatacgataaaatatttttacgtcaaattatgataaaatacttaagcataaaaa 34519226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University