View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6659_low_11 (Length: 251)
Name: NF6659_low_11
Description: NF6659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6659_low_11 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 11277 - 11525
Alignment:
| Q |
1 |
tctgtttctaataacatggattctgcctctttatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatcctttta |
100 |
Q |
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| T |
11277 |
tctgtttctaataacatggattctgcctctttatggcattgtagattaggtcatatctctgacgctattcacaaatgtattgcttcaacttatcctttta |
11376 |
T |
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| Q |
101 |
tgtcttacaagaatggtaataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttcgttatcctaatagtgttactcattctaatag |
200 |
Q |
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| T |
11377 |
tttcttacaagaatcataataaaaatactccttgtgatgtttgtcatttttccaaacaaagagttcttccttatcctaatagtgttactcattctaataa |
11476 |
T |
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| Q |
201 |
catttttgatttgttacatgctgagatatcgggcccctttgctactcct |
249 |
Q |
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|||||||||||||||||||||||| |||| |||||| | |||||||||| |
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| T |
11477 |
catttttgatttgttacatgctgatatatggggcccttatgctactcct |
11525 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 22454768 - 22454726
Alignment:
| Q |
43 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
85 |
Q |
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| T |
22454768 |
agattaggtcatatctctgacgctattcacaaatgtattgctt |
22454726 |
T |
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