View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6659_low_3 (Length: 498)
Name: NF6659_low_3
Description: NF6659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6659_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 24 - 488
Target Start/End: Original strand, 49690596 - 49691059
Alignment:
| Q |
24 |
tgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaataccct |
123 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| ||||||||||| |
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| T |
49690596 |
tgtgttactgctacttgtcttaactaggaaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaatcttgggttttttaaataccct |
49690695 |
T |
|
| Q |
124 |
tttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
49690696 |
tttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagag |
49690795 |
T |
|
| Q |
224 |
gaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690796 |
gaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaaaaatgc |
49690895 |
T |
|
| Q |
324 |
ttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgcaacca |
423 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49690896 |
ttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaac-tttttttatgaaaaactacataacagctttcaaatgcaacca |
49690994 |
T |
|
| Q |
424 |
tacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
488 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49690995 |
tacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatg |
49691059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 49678964 - 49679425
Alignment:
| Q |
19 |
ttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
49678964 |
ttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--------ttgattaaat |
49679055 |
T |
|
| Q |
119 |
acccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
49679056 |
acccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagcacgtccagttaaccaa |
49679155 |
T |
|
| Q |
219 |
aagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaa |
318 |
Q |
| |
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| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679156 |
aggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggagaag |
49679255 |
T |
|
| Q |
319 |
aatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49679256 |
aatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacataacagctttcaaatgc |
49679355 |
T |
|
| Q |
419 |
aaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
488 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49679356 |
aaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
49679425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 24 - 472
Target Start/End: Original strand, 49686336 - 49686774
Alignment:
| Q |
24 |
tgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtcttgggtttcttaaataccct |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || |||||| |
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|
| T |
49686336 |
tgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatcttggattggttggctaccct |
49686435 |
T |
|
| Q |
124 |
tttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtg |
223 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||| | |||| | | |
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|
| T |
49686436 |
tttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttaccaaaggag |
49686535 |
T |
|
| Q |
224 |
gaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcaccaagcttttggagaaaaatgc |
323 |
Q |
| |
|
|||||| ||| ||||||| ||| ||| | ||| | || | |||| ||||||||||| |||| | ||| |||||||||||||| |||||||||| |
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|
| T |
49686536 |
gaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgc |
49686629 |
T |
|
| Q |
324 |
ttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacataacagctttcaaatgcaacca |
423 |
Q |
| |
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||| ||||| || ||| ||| |||| || ||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||| ||| |
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| T |
49686630 |
ttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaac-tttttatatgaaagacaacataacagctttcaaatgcagcca |
49686725 |
T |
|
| Q |
424 |
tacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagt |
472 |
Q |
| |
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||||| |||||||| || | | || |||| ||||||||||| ||||||| |
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|
| T |
49686726 |
tacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagt |
49686774 |
T |
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