View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6659_low_5 (Length: 359)
Name: NF6659_low_5
Description: NF6659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6659_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 79 - 350
Target Start/End: Original strand, 40181713 - 40181985
Alignment:
| Q |
79 |
gttcgattttagatttccacccttctccttccatttgtgagtgtggccactaggccactaatctatagaaagaaataatgactaaatgatatgtttggtc |
178 |
Q |
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| T |
40181713 |
gttcgattttagatttccacccttctccttccatttgtgagtgtggccaccaggccactaatctatagaaagaaataatgactacatgatatgtttggtc |
40181812 |
T |
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| Q |
179 |
ctttttaggttttgctttagttcttttaag-nnnnnnnnnnnngtttgatcctttaagttacaaacgttaaacactttagactcttcaannnnnnnggtt |
277 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40181813 |
ctttttaggttttgctttagttcttttaagttattttttgtttgtttgatcctttaagttacaaacgttaaacactttagactcttcaatttttttggtt |
40181912 |
T |
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| Q |
278 |
tcacacattttagtttcttaagttacaaacgttagtccgcccaaacccgcaagttacaaacatgacagttgta |
350 |
Q |
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| T |
40181913 |
tcacacattttagtttcttaagttacaaacgttagtccgcccaaacccgtaagttacaaacatgacagctgta |
40181985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 40179410 - 40179336
Alignment:
| Q |
13 |
aatataactattttgattaacacttgtttcattaacaccatttcatttactaataataattgtcctgttcgattt |
87 |
Q |
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| T |
40179410 |
aatataactattttgattaacacttgtttcattaacaccatttcatttactaataataattgtcctgttcgattt |
40179336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 14728746 - 14728710
Alignment:
| Q |
222 |
tttgatcctttaagttacaaacgttaaacactttaga |
258 |
Q |
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| T |
14728746 |
tttgatcatttaagttacaaactttaaacactttaga |
14728710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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