View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_10 (Length: 330)
Name: NF6660_high_10
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 36901724 - 36901418
Alignment:
| Q |
17 |
aaattggtgccttctccttcacgtatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaactatgg |
116 |
Q |
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| T |
36901724 |
aaattggtgccttctccttcacatatgccattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaactatgg |
36901625 |
T |
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| Q |
117 |
agggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccaaaatattttcatggattagagagaatgtacagag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36901624 |
agggttaaaatgccattaatcttctttgtatatattaccatccgtttcaaaatagcaatattaccataatattttcatggattagagagaatgtacagag |
36901525 |
T |
|
| Q |
217 |
gagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatgtttatcagttagtagaatccattaggtttgta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36901524 |
gagagattagattcatcatggaaagtgttagataataagatttagcttatgttattaggccttttatctttatcagttagtagaatccattaggtttgta |
36901425 |
T |
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| Q |
317 |
gtattat |
323 |
Q |
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|||||| |
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| T |
36901424 |
atattat |
36901418 |
T |
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