View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_13 (Length: 244)
Name: NF6660_high_13
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 5663172 - 5663378
Alignment:
| Q |
16 |
cttctcacaagtagttaaagaca--ttagcttcacgttctcctccatttcctgtcaattt-ggtactcacgagccagtagttatgttctgctgccttggg |
112 |
Q |
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| T |
5663172 |
cttctcacaagaagttaaagacacattagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggt |
5663271 |
T |
|
| Q |
113 |
ttataacttcttcatcttcctcctgttattatactactgttgttataatagttttcttctatgctgatattgctaacatgttactataaactgcttatga |
212 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
5663272 |
ttataacttcttcatctttct---gttattatactactgttgttataatagttttcttctgtgctgatattgctaacatgttactataatctgcttatga |
5663368 |
T |
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| Q |
213 |
gaatcatgtg |
222 |
Q |
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|||||||||| |
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| T |
5663369 |
gaatcatgtg |
5663378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 52131411 - 52131504
Alignment:
| Q |
16 |
cttctcacaagtagttaaaga-cat-tagcttcacgttctcctccatttcctgtcaatttggtactcacgagccagtagttatgttctgctgccttgg |
111 |
Q |
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| T |
52131411 |
cttctcacaagaagtcaaagaacatgtagcgtcacgttatcctccatttcctgtcaatttggtactcacgaga----agttatgttctgctgccttgg |
52131504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 11649159 - 11649126
Alignment:
| Q |
78 |
ctcacgagccagtagttatgttctgctgccttgg |
111 |
Q |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttgg |
11649126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 22007856 - 22007884
Alignment:
| Q |
50 |
ttctcctccatttcctgtcaatttggtac |
78 |
Q |
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| T |
22007856 |
ttctcctccatttcctgtcaatttggtac |
22007884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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