View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6660_high_14 (Length: 221)

Name: NF6660_high_14
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6660_high_14
NF6660_high_14
[»] chr1 (1 HSPs)
chr1 (130-181)||(21097528-21097579)
[»] scaffold0096 (1 HSPs)
scaffold0096 (129-181)||(43609-43661)
[»] chr8 (3 HSPs)
chr8 (138-204)||(23089964-23090030)
chr8 (130-204)||(1495861-1495934)
chr8 (30-72)||(44762076-44762118)
[»] chr7 (5 HSPs)
chr7 (31-74)||(6103010-6103053)
chr7 (31-74)||(41712399-41712442)
chr7 (30-72)||(30452806-30452848)
chr7 (27-65)||(42513058-42513096)
chr7 (31-72)||(30456415-30456456)
[»] chr3 (3 HSPs)
chr3 (94-186)||(19798129-19798223)
chr3 (27-99)||(1830870-1830943)
chr3 (31-72)||(36326599-36326640)
[»] chr5 (2 HSPs)
chr5 (30-72)||(10321868-10321910)
chr5 (31-76)||(24108803-24108848)
[»] chr4 (2 HSPs)
chr4 (30-72)||(55322333-55322375)
chr4 (31-72)||(27387729-27387770)


Alignment Details
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 21097579 - 21097528
Alignment:
Q  130 atataagctgatgcatactcataactataacaactacaaaatagcaatgata 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21097579 atataagctgatgcatactcataactataacaactacaaaataacaatgata 21097528  T

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Target: scaffold0096 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 43609 - 43661
Alignment:
Q  129 aatataagctgatgcatactcataactataacaactacaaaatagcaatgata 181  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  43609 aatataagctgatgcatactcataactataacaactgcaaaataacaatgata 43661  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 23090030 - 23089964
Alignment:
Q  138 tgatgcatactcataactataacaactacaaaatagcaatgataattatcctagaattcctaaataa 204  Q
    |||||||||||||| ||  |||||||||||||||  |||||||| |||| |||||||||||||||||    
T  23090030 tgatgcatactcatgaccgtaacaactacaaaatgacaatgatagttattctagaattcctaaataa 23089964  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 1495861 - 1495934
Alignment:
Q  130 atataagctgatgcatactcataactataacaactacaaaatagcaatgataattatcctagaattcctaaataa 204  Q
    ||||||| ||||| |||||||| ||  ||||||||||||||| ||||| ||| |||| |||||||| ||||||||    
T  1495861 atataagttgatg-atactcatgaccgtaacaactacaaaatggcaattatagttatactagaatttctaaataa 1495934  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 44762118 - 44762076
Alignment:
Q  30 atgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||    
T  44762118 atgatacgacccaattcgagtagggatcacactccagaattta 44762076  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 6103053 - 6103010
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataatttaag 74  Q
    ||||||||||||||||||||| | |||||||||||||| |||||    
T  6103053 tgatacaacccaattcgagtaggaatcacactccataaattaag 6103010  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 41712442 - 41712399
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataatttaag 74  Q
    |||||| |||||||||||||||||||||||||||| || |||||    
T  41712442 tgatacgacccaattcgagtaaggatcacactccaaaaattaag 41712399  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 30452848 - 30452806
Alignment:
Q  30 atgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||    
T  30452848 atgatacgacccaattcgagtagggatcacactccagaattta 30452806  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 42513058 - 42513096
Alignment:
Q  27 agtatgatacaacccaattcgagtaaggatcacactcca 65  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  42513058 agtatgatacgacccaattcgagtagggatcacactcca 42513096  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 30456456 - 30456415
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    |||||| |||||||||||||| ||||||||||||| ||||||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaattta 30456415  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 19798129 - 19798223
Alignment:
Q  94 ttgattctaatcatgagtggtactacaatgcttataatataagctgatgcatactcataa--------ctataacaactacaaaatagcaatgataatta 185  Q
    |||||||||||||||||||||||   ||||||||||   ||||||||||||| |||||||        |||||||||||| |||||||||| ||||||||    
T  19798129 ttgattctaatcatgagtggtac---aatgcttata---taagctgatgcattctcataatgagataactataacaactataaaatagcaaggataatta 19798222  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 1830943 - 1830870
Alignment:
Q  27 agtatgatacaacccaattcgagtaaggatcacactccataatttaaggagaattt-agaaaagaaacttgatt 99  Q
    |||||||||| ||||||||| |||| ||||||||||||| ||| ||  |||||||| ||||||| || ||||||    
T  1830943 agtatgatacgacccaattcaagtagggatcacactccagaatctagagagaatttgagaaaaggaaattgatt 1830870  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 36326640 - 36326599
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    |||||| |||||||||||||| ||||||||||||| ||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaattta 36326599  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 10321868 - 10321910
Alignment:
Q  30 atgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||    
T  10321868 atgatacgacccaatttgagtagggatcacactccataattta 10321910  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 24108848 - 24108803
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataatttaagga 76  Q
    |||||| |||||||||||||| ||||||||||||| || |||||||    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaattaagga 24108803  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 55322333 - 55322375
Alignment:
Q  30 atgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||    
T  55322333 atgatacgacccaattcgagtagggatcacactccagaattta 55322375  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 27387770 - 27387729
Alignment:
Q  31 tgatacaacccaattcgagtaaggatcacactccataattta 72  Q
    |||||| |||||||||||||| ||||||||||||| ||||||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaattta 27387729  T

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