View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_16 (Length: 215)
Name: NF6660_high_16
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_16 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 3383 - 3181
Alignment:
| Q |
4 |
cctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgaaatggagtaagatggtcccagaatcaagttagctgag |
103 |
Q |
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| T |
3383 |
cctcttcattgagtatattatcatatttgaaattgaaagatcccttcttatgaaacaaagtgcaatggagtaagatggtcccagaataaagttagctgag |
3284 |
T |
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| Q |
104 |
tcactaccacaacatgttctattttggctaatgtgtcaatgttagcgcagtttctttctacaatgttcaagggcatcttttgcagctgcaaggatttgat |
203 |
Q |
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| T |
3283 |
tcactaccaaaacaagttctattttggctaatgtgtcaatgttagcgcagtttctttctacaatgttcaagggcatcttttgcagctgcaaggatttgat |
3184 |
T |
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| Q |
204 |
gat |
206 |
Q |
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||| |
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| T |
3183 |
gat |
3181 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 30275394 - 30275256
Alignment:
| Q |
36 |
ttgaaagatccctt-cttatgaaacaaagtgaaatggagtaagatggtcccagaatcaagttagctgagtcactaccacaacatg-ttctattttggcta |
133 |
Q |
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|||||||| ||||| |||||||||||| ||| || |||| ||||| || | |||||||||||| |||||||||| ||||||| | |||||||||||| | |
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| T |
30275394 |
ttgaaagagcccttacttatgaaacaa-gtgcaacggagcaagatagttctagaatcaagttacctgagtcacttacacaacaggtttctattttggcca |
30275296 |
T |
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| Q |
134 |
atgtgtcaatgttagcgcagtttctttctacaatgttcaa |
173 |
Q |
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| T |
30275295 |
atttgtcaacattggtgcagtttctctctaccatggtcaa |
30275256 |
T |
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