View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_3 (Length: 633)
Name: NF6660_high_3
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 11 - 617
Target Start/End: Original strand, 48501382 - 48501988
Alignment:
| Q |
11 |
caaaggagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
110 |
Q |
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| T |
48501382 |
caaaagagacgaatggtgaaaacaaggttgaagaaaatggagagagattctggtgtgtgcgagtctatgatccatgcaatgggctctggtttgagttttt |
48501481 |
T |
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| Q |
111 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
210 |
Q |
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| T |
48501482 |
gaagctgggatctagggcaagtgctatcgtgcgctgtgggtgagttggatatgatttcttggaggagttggagaaggagtgggaggaaattagggttttc |
48501581 |
T |
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| Q |
211 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
310 |
Q |
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| T |
48501582 |
tgaagagagtgtgcatttctcggaaatccaaagaggtttttgagtgttgaatggatggaagccttgtaagaataccatgaaggttactaaggcttctgag |
48501681 |
T |
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| Q |
311 |
tctgacccaaaagttcgctctgctttgagataaatagaacgagttgaatcgttttgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
410 |
Q |
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| T |
48501682 |
tctgacccagaagttcgctctgctttgagataaatagaacgagttgaatcgttatgtccatctctagcaagttcgaactttggtggtgagtcaaactcat |
48501781 |
T |
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| Q |
411 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
510 |
Q |
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| T |
48501782 |
aattcctccactctactgagttggggagttcagatatccatgaccaaatatccatattgatattgtatggtgtgttgttaacggaatatggattgaaaga |
48501881 |
T |
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| Q |
511 |
ggattgagttaatggggttagttttaaggagagaatgaatgataatgtgattgccaacatggaaggattttgaagccatgaagagaagaggaacgggtgg |
610 |
Q |
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| T |
48501882 |
ggattgagttaatggggttagttttaaggagagaatgaatgataatgtgattgccaacatggaaggattttgaagccatgaagagaagaggaacgggtgg |
48501981 |
T |
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| Q |
611 |
ttgtaat |
617 |
Q |
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| T |
48501982 |
ttgtaat |
48501988 |
T |
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