View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_4 (Length: 464)
Name: NF6660_high_4
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 42832729 - 42832580
Alignment:
| Q |
299 |
gagatgaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagttgagaacatcatcgctttat |
398 |
Q |
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| T |
42832729 |
gagatgaaggctcagaaggatccattggtagttttataatcatgaacaaaaattttccattccttcctaaaataggtagttgagaacatcatcgctttat |
42832630 |
T |
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| Q |
399 |
gaaaagcaaaataaaagacaatagaacaaattgaaaataagcaagtgaaa |
448 |
Q |
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| T |
42832629 |
gaaaagcaaaataaaaaacaatagaacaaattgaaaataagcaagtgaaa |
42832580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 42833014 - 42832815
Alignment:
| Q |
14 |
acagaccaccgttaaaagattttgacattatgaagtcatgatatgtgatgcaataaaggag------tatttgaaactcaagatttgacctagatatatt |
107 |
Q |
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| T |
42833014 |
acagaccaccgttaaaagattttgacattatgaagtcatgatatgtgatgcaataaaggatacgtaatatttgaaactcaagatttgacctagatatatt |
42832915 |
T |
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| Q |
108 |
aacacaaactttnnnnnnnnnnnnnnnnnnntcaggacatcaatcaacataacaacctttaattcacactatgcactaccactttcactattttatctgg |
207 |
Q |
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| T |
42832914 |
aacacaaactttaaaaaaaaaataaaaaaa-tcaggacatcaatcaacataacaatctttaattcacactatgcactaccactttcactattttatctgg |
42832816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 42832791 - 42832756
Alignment:
| Q |
237 |
tgcagcgacttgtatcatgtttttgaaatctaccct |
272 |
Q |
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| T |
42832791 |
tgcagcgacttgtatcatgtttttgaaatctaccct |
42832756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 41940905 - 41940824
Alignment:
| Q |
302 |
atgaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagttgaga |
383 |
Q |
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| T |
41940905 |
atgaaggctcagaaggatccattggtagttttctaatcataaaggaaaattttccattccttcataaaataggtagttgaga |
41940824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 28815872 - 28815780
Alignment:
| Q |
302 |
atgaaggctcagaaggatccattggtagtttta-taatcatgaacgaaaattttccattccttcctaaaataggtagttgagaacatcatcgc |
393 |
Q |
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| T |
28815872 |
atgaaggctcagaaggatccattggtaattttactaatcataaaggaaaattctcaattccttcataaaataggtagttttcaacatcatcgc |
28815780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 44139614 - 44139689
Alignment:
| Q |
304 |
gaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagtt |
379 |
Q |
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||||||||||||||||||||||||| |||| ||||||| || ||||||| || |||||||| |||||||||||||| |
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| T |
44139614 |
gaaggctcagaaggatccattggtaattttctaatcataaaggaaaattctcaattccttcataaaataggtagtt |
44139689 |
T |
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