View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_6 (Length: 379)
Name: NF6660_high_6
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 161 - 379
Target Start/End: Complemental strand, 36304533 - 36304322
Alignment:
| Q |
161 |
tatggacaattcaaaagacaattgtcaatgtcattaataattccgaaatggatcgaatgcagttgtaatttcatgtgtaagttgaagatcagatggttat |
260 |
Q |
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| T |
36304533 |
tatggacaattcaaaagacaactgtcaatgtcattaataattccgaaatggatcaaatgcagttgtaatttcatatgtaagttgaagatcagatggttat |
36304434 |
T |
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| Q |
261 |
aatttatgattttatgttatattgtaaatcagattttagaatttaaaacataaactgtccaatccgcgtattgtgactgcagtcaatccaacaatccgcg |
360 |
Q |
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| T |
36304433 |
aatttatgattt-------tattgtaaatcagattttagaattgaaaacataaactgtccaatccgcgtattgtgactgcagtcaatccaacaatccgcg |
36304341 |
T |
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| Q |
361 |
cattgttagctgtttttat |
379 |
Q |
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| T |
36304340 |
cattgttagatgtttttat |
36304322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 36304678 - 36304560
Alignment:
| Q |
16 |
atgggcgactctaagaattgaactcaggttcttttcctggagagagtgtattaccaactccctcgacatattgttaaaaaaggagagtgtattttgaatg |
115 |
Q |
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| T |
36304678 |
atgggcaactctaagaattaaactcaggttcttttcctggagagagtgtattaccaactccctcgacatattgttaaaaaaggagagtgttttttgaatg |
36304579 |
T |
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| Q |
116 |
ataagaaattaaatctgat |
134 |
Q |
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| T |
36304578 |
ataagaaattaaatctgat |
36304560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 36319780 - 36319693
Alignment:
| Q |
222 |
gttgtaatttcatgtgtaagttgaagatcagatggttataatttatgattttatgttatattgtaaatcagattttagaatttaaaaca |
310 |
Q |
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| T |
36319780 |
gttgtaatttcgtctgtaagttgaagatcggatggttataatttatgattttaagtt-gattgtaaatcagattttataatttaaaaca |
36319693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 21626179 - 21626127
Alignment:
| Q |
264 |
ttatgattttatgttatattgtaaatcagattttagaatttaaaacataaact |
316 |
Q |
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| T |
21626179 |
ttatgattttaagttgtattgtaaatcagagtttagaatttgaaacacaaact |
21626127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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