View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_7 (Length: 358)
Name: NF6660_high_7
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 36303916 - 36304250
Alignment:
| Q |
19 |
tttatgtttcatctagtgtaggttttaccttattcattatctctctccaattaatctaaatatttatcatctttttcttttccatcagaattcacatcca |
118 |
Q |
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| T |
36303916 |
tttatgtttcatctagtgtaggttttaccttattcattatctctctccaattaatctaaatatttatcatctttttcttttccatcagaattcacatcca |
36304015 |
T |
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| Q |
119 |
tattgttgattctatattcaggtac----tcatctataatattctctttcattactatgtgcttttagttttgcttttgaagttcattaatatatgaatt |
214 |
Q |
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| T |
36304016 |
tattgttgtttctatattcaggtacgtactaatctataatattctctttcattactatgtgcttttagttttgcttttgaagttcattaatatatgaatt |
36304115 |
T |
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| Q |
215 |
tgtttctatcttttagcataatctgattctttcatgtgaatcacattcatattcatgtttgcatgttgcatgcaactggtaactaagggatgcaattgca |
314 |
Q |
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| T |
36304116 |
tgtttctatcttttagcataatctgattctttcatgtgaatcacattcatattcatgtttgcatgttgcatgcaactggtaactaagggatgcaattgca |
36304215 |
T |
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| Q |
315 |
tccatttacattatcttaattatttgaagaattat |
349 |
Q |
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| T |
36304216 |
tccatttacattatcttaattatttgaagaattat |
36304250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 36319496 - 36319582
Alignment:
| Q |
235 |
atctgattctttcatgtgaatcacattcatattcatgtttgcatgttgcatgcaactggtaactaagggatgcaattgcatccattt |
321 |
Q |
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| T |
36319496 |
atctgattttttcatgtgaatcacactcatatgcatgtctgcatgttgcatgcaactgataaataagggatgcagttgcatccattt |
36319582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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