View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_high_9 (Length: 335)
Name: NF6660_high_9
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 1412735 - 1412427
Alignment:
| Q |
17 |
aatttatccatttttcattgggttgttgatgattgtttgaaggacgagtactggagctgaacttaaaagagaaacaaattgaagaatgcgtgaaggagtt |
116 |
Q |
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| T |
1412735 |
aatttatccatttttcattgggttgttgatgattgtttgaaggacgggtactggagctgaacttaaaagagaaacaaattgaagaacgcgtggaggagtt |
1412636 |
T |
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| Q |
117 |
tgagtcaaaagtgaagttggttgaaggacaaatgaaatatctttattcgaagaaagaatccttcgaacttccttttcaatttgtttaacaatgcggcttt |
216 |
Q |
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| T |
1412635 |
tgagtcaaaagtgaagttggttgaaagacaaatgaaatatctttattcgaagaaagaatccttcgaacttccttttcaatttgtttaacaatttggcttt |
1412536 |
T |
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| Q |
217 |
ttcttttcttccttaatttgtctcgagaggaacatgaaggatacataagaaaccttgaagataaacattgaacctagttgaaaagggtccaaatattaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1412535 |
ttcttttcttccttaatttgtctcgagaggaacatgaaggatacataagaaaccttgaagataaacattgaacctagttgaaaagggtccaaatattaca |
1412436 |
T |
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| Q |
317 |
tatcctatg |
325 |
Q |
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||||||||| |
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| T |
1412435 |
tatcctatg |
1412427 |
T |
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