View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_low_1 (Length: 1164)
Name: NF6660_low_1
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 876; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 229 - 1161
Target Start/End: Complemental strand, 2627528 - 2626596
Alignment:
| Q |
229 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627528 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
2627429 |
T |
|
| Q |
329 |
aactagattttcctacctagaaacataccacaaacttgtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627428 |
aactagattttcctacctagaaacataccacaaactagtttactagtcctcttgtgagtttgttaaccatgcttgtgatgattatccataatttaaaatg |
2627329 |
T |
|
| Q |
429 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627328 |
gaaaaagtattatactatatgatattaatttgtcaatatttaccattttattgacataacgaagcttctatctcattcctatgttgaatagtatcttgat |
2627229 |
T |
|
| Q |
529 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggcgcatcaatgtccctctttgagtcagnnnnnnnttatcactgatgctataagaagat |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
2627228 |
attaaaaaattatggtgtttatcattaggtgataatgtgaaggtgcatcaatgtccctctttgagtcagaaaaaaattaccactgatgctataagaagat |
2627129 |
T |
|
| Q |
629 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627128 |
tgaagccaacagttcctgatctggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctga |
2627029 |
T |
|
| Q |
729 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
828 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627028 |
actctttatgcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagag |
2626929 |
T |
|
| Q |
829 |
catggaatggttgatatgtgctttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctaggttgcctg |
928 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2626928 |
catggaatggttgatatgtgctttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcatttctctagtttgcctg |
2626829 |
T |
|
| Q |
929 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
1028 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2626828 |
acatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaaatgaaggttttgc |
2626729 |
T |
|
| Q |
1029 |
atacatctcaaaaaataccagacctaggatctcacacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcct |
1128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2626728 |
atacatctcaaaaaataccagacctaggatctcaaacatcagtactcttgaaccagaagaaagtattcgaaaagacattctgtcctgcacacactttcat |
2626629 |
T |
|
| Q |
1129 |
gaaattagcataatcttcactgatgatgtccat |
1161 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |
|
|
| T |
2626628 |
gaaactagcataatcttcactgatgaggtccat |
2626596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 650 - 914
Target Start/End: Complemental strand, 2638837 - 2638573
Alignment:
| Q |
650 |
tggaaggacattctgtacagttgtttcagaataaaattttgattattccagacgctgcagctaccagtggtaaggctgaactctttatgcattctcctgc |
749 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||| |||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2638837 |
tggaaggacattctataccgttgtttcagaataaactttggattattccagaggctccaactacgggtggtaaggctgaactctttatgcattctcctgc |
2638738 |
T |
|
| Q |
750 |
cttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatggttgatatgtgc |
849 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| ||||| |||||||| ||| |
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| T |
2638737 |
cttaagcccattccacatttggggaaagaatctaaagttagaaaggcagaacagtccgatatttaaaaatatattagagcacggaatagttgatatctgc |
2638638 |
T |
|
| Q |
850 |
tttgaaaattgttcaagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
914 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2638637 |
tttgaaaattgttctagaatgagtgaagctcatttttctatcgcttccaatttcaagactcattt |
2638573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 2627739 - 2627573
Alignment:
| Q |
18 |
ttcatgtggtgcagcagtgtgtcatgagtggacatgattgctcgactggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627739 |
ttcatgtggtgcagcagtgtgtcatgagtggacatgattgctcgaccggatcatcgctgaaagagtgaacaatactgtcttcacgagttggatgggaatg |
2627640 |
T |
|
| Q |
118 |
atggcaggggtggtttggttggcagggaagcatttagatggagcaaagaagtagaatcatacggtga |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627639 |
atggcaggggtggtttggttggcagggaagcatttagatggagcaaagaagtagaatcatacggtga |
2627573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 916 - 1018
Target Start/End: Complemental strand, 2638526 - 2638424
Alignment:
| Q |
916 |
tctaggttgcctgacatagaaaccactatatgccttaacagaaaaagaaagcgaccagataaacatgctttatgtcctcaaattggcagagctcaagaaa |
1015 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||| |
|
|
| T |
2638526 |
tctaggttgcctgacatagaaacgactatgtgcctcgacagaaaaagaaagcgaccagataaacatgctttatgttctcaaattcgcagggagcaagaaa |
2638427 |
T |
|
| Q |
1016 |
atg |
1018 |
Q |
| |
|
||| |
|
|
| T |
2638426 |
atg |
2638424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 738 - 844
Target Start/End: Original strand, 44003835 - 44003941
Alignment:
| Q |
738 |
gcattctcctgccttaagcccgttccacatttggggaaagaatctaaagttggaaaggaagaaccatccgagacttaaaaatatattagagcatggaatg |
837 |
Q |
| |
|
||||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||| | | || || ||| || ||||| ||||||| ||||| ||| |
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|
| T |
44003835 |
gcattctcctggcttaagcccattccacatatggggaaagagtctaaagttggaaaggcatagccttcttagattttaaaatttattagatcatggcatg |
44003934 |
T |
|
| Q |
838 |
gttgata |
844 |
Q |
| |
|
||||||| |
|
|
| T |
44003935 |
gttgata |
44003941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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