View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_low_11 (Length: 294)
Name: NF6660_low_11
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_low_11 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 9804062 - 9803776
Alignment:
| Q |
1 |
tgtgtaagcaaaattcatggtgataaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttat |
100 |
Q |
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| T |
9804062 |
tgtgtaagcaaaattcatggtgataaggtcaactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttat |
9803963 |
T |
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| Q |
101 |
cacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaa |
200 |
Q |
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| T |
9803962 |
cacaaagcgaagaaggaaactttatagattttatcgtcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggatgtaa |
9803863 |
T |
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| Q |
201 |
cggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
287 |
Q |
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| T |
9803862 |
tggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
9803776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 9828889 - 9828638
Alignment:
| Q |
1 |
tgtgtaagcaaaattcatggtgataaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttat |
100 |
Q |
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| T |
9828889 |
tgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctga---------------atcaatagaggacttat |
9828805 |
T |
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| Q |
101 |
cacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaa |
200 |
Q |
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| T |
9828804 |
cacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataa |
9828705 |
T |
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| Q |
201 |
cggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcg |
270 |
Q |
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| T |
9828704 |
tggtgatgtcgactctgatttgaataacttacaagatttacaagatc---atagcaaggattctgattcg |
9828638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9755414 - 9755197
Alignment:
| Q |
1 |
tgtgtaagcaaaattcatggtgataaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttat |
100 |
Q |
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| T |
9755414 |
tgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctga---------------atcaatagaggacttat |
9755330 |
T |
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| Q |
101 |
cacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaa |
200 |
Q |
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| T |
9755329 |
cacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtcacaagatggaggacgtaa |
9755230 |
T |
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| Q |
201 |
cggtgatgtagactctgatttgaataactcgca |
233 |
Q |
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| T |
9755229 |
tggtgatgtggactctgatttgaatgactcgca |
9755197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 7368 - 7142
Alignment:
| Q |
25 |
aaggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttga |
124 |
Q |
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|||||| ||||||| ||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7368 |
aaggtcaactatcatcaaagtattccaacaaatgaatatgctcgtgataatgatgctggatcaatagaggacttatcacaaagtgaagaaggaaacttga |
7269 |
T |
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| Q |
125 |
gaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatg--gaggatgtaacggtgatgtagactctgatttg |
222 |
Q |
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| T |
7268 |
aaggttttattgttgatgattttgatatatctagctgtgaagtcgcctctagcaagtcacaagaaggagaggacgtaacggtgatgtggactctgattta |
7169 |
T |
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| Q |
223 |
aataactcgcatgatttacaatatcat |
249 |
Q |
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| T |
7168 |
aatgactcgcatgatttacaagatcat |
7142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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