View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6660_low_12 (Length: 253)
Name: NF6660_low_12
Description: NF6660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6660_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 9804271 - 9804039
Alignment:
| Q |
17 |
atatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcag |
116 |
Q |
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| T |
9804271 |
atatgtgtcgtctttagttcaagtagcaaggattcttatttgcaggatgtatctgaaatgcaaggtagtggaggtatttctctgccaacaagttctgcag |
9804172 |
T |
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| Q |
117 |
cagaaaagggaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag--- |
213 |
Q |
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| T |
9804171 |
cagaaaagcgaagaacttttactccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaaggct |
9804072 |
T |
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| Q |
214 |
-------aatgtgtaagcaaaattcatggtgat |
239 |
Q |
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| T |
9804071 |
caaatgaaatgtgtaagcaaaattcatggtgat |
9804039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 9814003 - 9813828
Alignment:
| Q |
39 |
gtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttta |
137 |
Q |
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| T |
9814003 |
gtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagtggaagtatttctctgtcaacaaattctgcagcagaaaagggaaagaattttta |
9813904 |
T |
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| Q |
138 |
ctccaattatgatcaaaacaatgaggaaatttctgattttataaggaggaagaaagcaagtaggctccgtctcaag |
213 |
Q |
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| T |
9813903 |
ctccaattaggatcaaatcaatgacgaaaaatctgattttataaggaggaagaaagtgagtaggctccgtctcaag |
9813828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 9829294 - 9829154
Alignment:
| Q |
38 |
agtagcaaggattcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaaggg-aagaactttt |
136 |
Q |
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| T |
9829294 |
agtaacaagaattctaattttcaagatgtatctgatatgcaaggtagtcaatgtaattctctgtcaacgtgttctgcagcagaaaagggaaagaatttgt |
9829195 |
T |
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| Q |
137 |
actccaattatgatcaaaacaatgaggaaatttctgatttt |
177 |
Q |
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| T |
9829194 |
actccaattatgatcaaagcaacgaggaagattctgatttt |
9829154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 9755830 - 9755702
Alignment:
| Q |
50 |
tcttatttgcaggatgtatctaaaatgcaaggtagtggaggtatttctctgccaacaagttctgcagcagaaaagggaa-gaacttttactccaattatg |
148 |
Q |
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| T |
9755830 |
tcttattttcaagatgtgtctgatatgcaaggcagtgaatatatttctcagtcaacatgttctgcaacaaaaaagggaaagaatttgtactccaattatg |
9755731 |
T |
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| Q |
149 |
atcaaaacaatgaggaaatttctgatttt |
177 |
Q |
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| T |
9755730 |
atcaaagcagtgaggaagattctgatttt |
9755702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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