View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6661_high_5 (Length: 429)
Name: NF6661_high_5
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 39991484 - 39991089
Alignment:
| Q |
13 |
aaaatctccaacagaaaaaatagtcttgttaagtcaaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggttaccaaagtaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991484 |
aaaatctccaacagaaaaaatagtcttgttaagtcaaagatgatgaggcacaatttctcaacaacctgaaacaatcacaatcaaaggttaccaaagtaaa |
39991385 |
T |
|
| Q |
113 |
cccttcaaggaacaaaggatccaaagataaccccacatgcacccttgttagaattccaacaccaaccgcaccaaactgcaaagatagtcacaacccacga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39991384 |
cccttcaaggaacaaaggatccaaagataaccccacatgcacccttgttagaattccaacaccaaccgcaccaaactgcagagagagtcacaacccacga |
39991285 |
T |
|
| Q |
213 |
ttttgaatggacaaagctccaaccttgtgacaaaagctcactcatacataatccttcctaccaaactagcttatgttaaaaagcacgtttgttaatgtta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991284 |
ttttgaatggacaaagctccaaccttgtgacaaaagcttact----cgtaatccttcctaccaaactagcttatgttaaaaagcacgtttgttaatgtta |
39991189 |
T |
|
| Q |
313 |
cagattatgaggtaaacaagtactgataccgaattctgaaagattttgagagctttttaaggaatcagaatcattgtttgttagatactgatatgactat |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39991188 |
cagattatgaggtaaacaagtacggataccgaattctgaaagattttgagagctttttaaggaatcagaatcattgtttgttagatactgatatgactat |
39991089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University