View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6661_high_6 (Length: 360)
Name: NF6661_high_6
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 38719059 - 38718731
Alignment:
| Q |
11 |
agaaaatgattacatttagttgatgggactttgaaccttgagtaatagaggtatccatatttaatgtctgacaggtcttgaatatgattacatttagttg |
110 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
38719059 |
agaatatgattacatttaattgatgagactttgaac---gagtaatagaggtatccatatttaatgtctgataggtcttaaatatgattacatttagttg |
38718963 |
T |
|
| Q |
111 |
aggggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtcttaccttgatgagtacatcaacaacctcagtgaatcctctg |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38718962 |
agaggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtcttaccttgatgagtacatcaacaacctcagtgaatcctctg |
38718863 |
T |
|
| Q |
211 |
caacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcagtagttcagcaaatcttgcatgtcccacatagcttgctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38718862 |
caacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcagtagttcagcaaatcttgcatgtcccacatagcttgctt |
38718763 |
T |
|
| Q |
311 |
caagtaaagcctcttcacatgcaagttgtgac |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38718762 |
caagtaaagcctcttcacatgcaagttgtgac |
38718731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 38719087 - 38719037
Alignment:
| Q |
61 |
gtatccatatttaatgtctgacaggtcttgaatatgattacatttagttga |
111 |
Q |
| |
|
||||||||||||| ||||| ||| |||| ||||||||||||||||| |||| |
|
|
| T |
38719087 |
gtatccatatttagtgtctaacatgtctagaatatgattacatttaattga |
38719037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University