View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_high_7 (Length: 246)
Name: NF6661_high_7
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 39992009 - 39991767
Alignment:
| Q |
3 |
tgagatgaagataaacaaccctaagcaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaa |
102 |
Q |
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| T |
39992009 |
tgagatgaagataaacaaccctaagaaataatgccacctaacaagtcaaaagaagaagcgtgcaaaattcatcaaatgatagtatccaagacccataaaa |
39991910 |
T |
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| Q |
103 |
atatgctgnnnnnnntaagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgttacattaaacaa |
202 |
Q |
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| T |
39991909 |
atatgctgaaaaaa-taagatcttgtcaatcttgctgttatcatctttcataagtgacaaaaacgtgggacacaaaattatatcacgtgacaataaacaa |
39991811 |
T |
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| Q |
203 |
aaccaactcactcataagattgaatgaaaattctaggaaacaac |
246 |
Q |
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| T |
39991810 |
aaccaactcactcataagattgaatgaaaattctaggaaacaac |
39991767 |
T |
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