View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_high_8 (Length: 223)
Name: NF6661_high_8
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 42451206 - 42451004
Alignment:
| Q |
13 |
aatataatcaataaaaaatatttaaacaagaactttcctgctcggtcctatagtcctatataaatagtcgatcacttgctttccaaattgtcacagaaag |
112 |
Q |
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| T |
42451206 |
aatataatcaataaaaaatatttaaacaagaactttcctgctcggtcctatagtcctatataaatagtcgatcacttgctttccaaattgtcacagaaag |
42451107 |
T |
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| Q |
113 |
aagaagagaaaaacagtcattggtcttttgaaatcaaaggtacgttacataaaactgagtattgacacaggctattaattagttaagtagggtttcctta |
212 |
Q |
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| T |
42451106 |
aagaagagaaaaacattcattggtcttttgaaatcaaaggtacgttacataaaactgagtattgacacaggctattaattagttaagtagggtttcctta |
42451007 |
T |
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| Q |
213 |
aaa |
215 |
Q |
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||| |
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| T |
42451006 |
aaa |
42451004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 743706 - 743654
Alignment:
| Q |
159 |
acataaaactgagtattgacacaggctattaattagttaagtagggtttccttaaaa |
215 |
Q |
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| T |
743706 |
acataaaactgagtattgacacatgct----attagttaagtagggtttccttaaaa |
743654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 743892 - 743799
Alignment:
| Q |
25 |
aaaaaatatttaaacaagaactttcctgctcggtcctatagtcctatataaatagtcgatcacttgctttccaaattgtcacagaaagaagaagagaaaa |
124 |
Q |
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|||||||||||||||||||||||||||||| | || |||||||||||| | |||||||||||| || |||||||||||| |||||||| ||| |
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| T |
743892 |
aaaaaatatttaaacaagaactttcctgcttcg-------gttctatataaatagaggttcacttgctttcaaagttgtcacagaaa-aagaagagcaaa |
743801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 42450940 - 42450909
Alignment:
| Q |
192 |
tagttaagtagggtttccttaaaacaaagata |
223 |
Q |
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| T |
42450940 |
tagttaagtagggtttccttaaaacaaagata |
42450909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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