View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_low_10 (Length: 326)
Name: NF6661_low_10
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 25565647 - 25565407
Alignment:
| Q |
26 |
aatttaaatttggcaatagattccaaaatgataatattcatcgaataagcaaaattacaatttgatactttatagaacaattcattacatgttcacttgt |
125 |
Q |
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| T |
25565647 |
aatttaaatttggcaataaattccaaaatgataatattcattgaataagcaaaattacaatttgatactttatagaacagttcattacatgttcacttgc |
25565548 |
T |
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| Q |
126 |
aaataatataattttctaaccaacaagatgaattaatcagcatctattggagattnnnnnnnnnnnnnnnntgaagaattaattatgtaacacaatttga |
225 |
Q |
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| T |
25565547 |
aaataatatatttttctaaccaacaagatgaattaatcagcatctattggagatt--aaaaataaaaagaatgaagaattaattatgtaacacaa-ttga |
25565451 |
T |
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| Q |
226 |
actcatgagtcgttggaatctgatatcctagaaatcttcctatg |
269 |
Q |
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| T |
25565450 |
agtcatgagtcgttggaatctgatatccgagaaatctttctatg |
25565407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 25588030 - 25587759
Alignment:
| Q |
47 |
tccaaaatgataatatt----catcgaataagcaaaattacaatttgatactttatagaacaattcattacatgttcacttgtaaataatataattttct |
142 |
Q |
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| T |
25588030 |
tccaaaatgataatattaattcattggataaacaaacttacaatttgatactttatagaacagttcattacatgttcacttgcaaataatataattttct |
25587931 |
T |
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| Q |
143 |
aaccaacaagatgaattaatcagcatctattggagatt---nnnnnnnnnnnnnnnntgaagaattaattatgtaacacaatttgaactcatgagtcgtt |
239 |
Q |
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| T |
25587930 |
aaccaacaagatgaattaatcagcatctattggagattaaaaaaaaaaaaaaagaaatgaagaattaattatgtaacacaatttgaagtcatgagtcgtt |
25587831 |
T |
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| Q |
240 |
ggaatctgatatcctagaaatcttcctatgctgatacttgggaaaaaatgagaaacaaccaattgatgtttt |
311 |
Q |
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| T |
25587830 |
ggaatctgatatccgagaaatattcctatgctgatgtttgggaaaaaaggagaaacaaccaattgatgtttt |
25587759 |
T |
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