View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6661_low_11 (Length: 251)

Name: NF6661_low_11
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6661_low_11
NF6661_low_11
[»] chr2 (15 HSPs)
chr2 (1-232)||(10505202-10505433)
chr2 (11-165)||(10470619-10470773)
chr2 (55-169)||(10542614-10542728)
chr2 (10-133)||(10486685-10486807)
chr2 (24-117)||(7483386-7483479)
chr2 (24-129)||(10491181-10491286)
chr2 (168-212)||(10471207-10471251)
chr2 (25-100)||(27965459-27965534)
chr2 (171-229)||(10516504-10516562)
chr2 (25-109)||(28106600-28106684)
chr2 (25-100)||(10846887-10846962)
chr2 (119-169)||(9082807-9082857)
chr2 (168-206)||(10486814-10486852)
chr2 (168-199)||(10491286-10491317)
chr2 (33-94)||(10858407-10858471)
[»] chr5 (1 HSPs)
chr5 (168-229)||(33600926-33600986)
[»] chr4 (1 HSPs)
chr4 (136-169)||(17733856-17733889)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10505202 - 10505433
Alignment:
Q  1 ccaactattgatttggcaagagctttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10505202 ccaactattgatttggcaagagctttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaa 10505301  T
Q  101 gtgtgctttgactaatgtaataaatgattggcgaggagatgggaacttgcagctcatgaagtaaggatagctagcctaggttctttcctctattaataac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10505302 gtgtgctttgactaatgtaataaatgattggcgaggagatgggaacctgcagctcatgaagtaaggatagctagcctaggttctttcctctattaataac 10505401  T
Q  201 aaaggctaagagtaattttctcacaagcatat 232  Q
    ||||||||||||||||||||||||||||||||    
T  10505402 aaaggctaagagtaattttctcacaagcatat 10505433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 10470619 - 10470773
Alignment:
Q  11 atttggcaagagctttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgctttg 110  Q
    ||||||||||  ||||||||| ||||||||||||||||||||| | |||| ||||||||||||||| ||| |||||||||||| ||||    |||||       
T  10470619 atttggcaaggactttttctcgaacaaacaacaaatcaaggtctaggtgtttggttctagaatgccaaatgtgattatgactctaagcgtaagtgctgct 10470718  T
Q  111 actaatgtaataaatgattggcgaggagatgggaacttgcagctcatgaagtaag 165  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  10470719 actaatgcaataaatgattgccgtggagatgggaacttgcagctcatgaagtaag 10470773  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 169
Target Start/End: Original strand, 10542614 - 10542728
Alignment:
Q  55 atgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgctttgactaatgtaataaatgattggcgaggagatgggaacttgcagct 154  Q
    |||||| |||||||||||||||||||| ||||||||||||||  ||  ||||||||||||  |  |||||| ||| || |||||||||||||||||||||    
T  10542614 atgtgtttggttctagaatgccgaatcagattatgactcaaactaaaagtgctttgactatcgcgataaataattagcaaggagatgggaacttgcagct 10542713  T
Q  155 catgaagtaaggata 169  Q
    |||| ||||||||||    
T  10542714 catgcagtaaggata 10542728  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 10486685 - 10486807
Alignment:
Q  10 gatttggcaagagctttt-tctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgctt 108  Q
    ||||||||||||| |||| ||||||| | ||||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||  | ||  ||||||    
T  10486685 gatttggcaagagtttttttctcaaaaacacaacaattcaaggtccatgtgtttggttctagaatgccaaatctgaatacgactcagtgaaa--gtgctt 10486782  T
Q  109 tgactaatgtaataaatgattggcg 133  Q
    |||||||||  ||||||||||||||    
T  10486783 tgactaatgctataaatgattggcg 10486807  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 7483479 - 7483386
Alignment:
Q  24 tttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgctttgactaatg 117  Q
    ||||||||||| | ||||||||||||| |||||| || ||||||||||||| | ||||||||||||||||||||| |  ||||| |||||||||    
T  7483479 tttttctcaaaaacacaacaaatcaagctccatgggtttggttctagaatgtcaaatctgattatgactcaaagcgaaggtgctctgactaatg 7483386  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 10491181 - 10491286
Alignment:
Q  24 tttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgctttgactaatgtaataa 123  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||  | |||||| |||||||||| |||||   ||||||||| ||| | ||||    
T  10491181 tttttctcaaaaacacaacaaatcaaggtccatgtgtttggttctagaatttcaaatctggttatgactcagagcaaaattgctttgaccaatttcataa 10491280  T
Q  124 atgatt 129  Q
    ||||||    
T  10491281 atgatt 10491286  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 10471207 - 10471251
Alignment:
Q  168 tagctagcctaggttctttcctctattaataacaaaggctaagag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10471207 tagctagcctaggttctttcctctattaataacaaaggctaagag 10471251  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 27965459 - 27965534
Alignment:
Q  25 ttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaa 100  Q
    |||||||||||||| ||||||||||| ||||| ||| ||||||| |||||| ||||| | ||||||||||||||||    
T  27965459 ttttctcaaacaaagaacaaatcaagttccatatgtttggttcttgaatgcggaatcaggttatgactcaaagcaa 27965534  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 10516504 - 10516562
Alignment:
Q  171 ctagcctaggttctttcctctattaataacaaaggctaagagtaattttctcacaagca 229  Q
    ||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  10516504 ctagcctaggttctttcctttattagtaacaaaggctaggagtaattttctcccaagca 10516562  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 28106684 - 28106600
Alignment:
Q  25 ttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaagtgtgcttt 109  Q
    |||||||||||||| ||||||| ||| ||| | ||| ||||||| |||||||||||| | ||||||||||||||||  |||||||    
T  28106684 ttttctcaaacaaaaaacaaataaagttccgtatgtttggttcttgaatgccgaatcaggttatgactcaaagcaacagtgcttt 28106600  T

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Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 10846887 - 10846962
Alignment:
Q  25 ttttctcaaacaaacaacaaatcaaggtccatgtgtgtggttctagaatgccgaatctgattatgactcaaagcaa 100  Q
    |||||||||||||| |||||||||||| |  | ||| | |||||||||||||||||  ||||||||||||||||||    
T  10846887 ttttctcaaacaaagaacaaatcaaggcctgtatgtttagttctagaatgccgaattggattatgactcaaagcaa 10846962  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 9082857 - 9082807
Alignment:
Q  119 aataaatgattggcgaggagatgggaacttgcagctcatgaagtaaggata 169  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  9082857 aataaatgattggtgtggagatgggaaattgcagctcatgaagtaaggata 9082807  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 10486814 - 10486852
Alignment:
Q  168 tagctagcctaggttctttcctctattaataacaaaggc 206  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  10486814 tagctagcctaggttctttcctctattaataacacaggc 10486852  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 10491286 - 10491317
Alignment:
Q  168 tagctagcctaggttctttcctctattaataa 199  Q
    ||||||||||||||||||||||||||||||||    
T  10491286 tagctagcctaggttctttcctctattaataa 10491317  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 10858407 - 10858471
Alignment:
Q  33 aacaaacaacaaatcaaggtccatgtgtg---tggttctagaatgccgaatctgattatgactca 94  Q
    |||||| ||||||||||||||||| |||    |||||||||||||||||||| ||||| ||||||    
T  10858407 aacaaagaacaaatcaaggtccatatgttgtttggttctagaatgccgaatcagattaggactca 10858471  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 33600926 - 33600986
Alignment:
Q  168 tagctagcctaggttctttcctctattaataacaaaggctaagagtaattttctcacaagca 229  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||    
T  33600926 tagctagcctaggttctttcctctattaataacaaaggataagag-cattttctctcaagca 33600986  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 17733856 - 17733889
Alignment:
Q  136 gagatgggaacttgcagctcatgaagtaaggata 169  Q
    |||||||||||||||||||||||||| |||||||    
T  17733856 gagatgggaacttgcagctcatgaagcaaggata 17733889  T

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