View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_low_12 (Length: 247)
Name: NF6661_low_12
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 6552917 - 6552706
Alignment:
| Q |
18 |
acctttaacctcttcatggtagtatcatttctgtttataccatggagagctgcatctgcagctctaaaatcgtaaaactcgatcaacttgtgacgctgac |
117 |
Q |
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| T |
6552917 |
acctttaacctcttcatggtagtatcatttctgtttataccatggagagctgcatctgcagctctaaaatcgtaaaactcgatcaacttgtgacgctgac |
6552818 |
T |
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| Q |
118 |
tgcgagggttttcatgaatctgcagttgttcagtaaggttcaccaatcacataaattatcttgatcaatatttctgtaactaacaaataaatttgtaacc |
217 |
Q |
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| T |
6552817 |
tgcgagggttttcatgaatctgcagttgttcagtaaggttcaccaatcacataaattatcttgatcaatatttctgtaactaacaaataaatttgtaacc |
6552718 |
T |
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| Q |
218 |
aaaattacctct |
229 |
Q |
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|||||||||||| |
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| T |
6552717 |
aaaattacctct |
6552706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 49059964 - 49060138
Alignment:
| Q |
18 |
acctttaacctcttcatggtagtatcatttctgtttataccatggagagctgcatctgcagctctaaaatcgtaaaactcgatcaacttgtgacgctgac |
117 |
Q |
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|||||||||||||||||| | ||||||||||| |||| | ||||||||||| ||||||||| ||||| |||||| || |||||||| ||| || || |
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| T |
49059964 |
acctttaacctcttcatgcttgtatcatttctatttaaatcatggagagctttttctgcagcttcaaaattgtaaaattcaatcaacttatgatgccaac |
49060063 |
T |
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| Q |
118 |
tgcgagggttttcatgaatctgcagttgttcagtaaggttcaccaatcac--ataaattatcttgatcaatattt |
190 |
Q |
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| T |
49060064 |
tgtgagggttttcatgaatctgcggttattgagtaaggttaaccagtcacatataaattatcattatcaatattt |
49060138 |
T |
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