View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6661_low_3 (Length: 616)

Name: NF6661_low_3
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6661_low_3
NF6661_low_3
[»] chr8 (2 HSPs)
chr8 (117-604)||(33615508-33616006)
chr8 (20-74)||(2358604-2358658)
[»] chr3 (5 HSPs)
chr3 (20-110)||(55477975-55478065)
chr3 (23-111)||(41885430-41885518)
chr3 (20-100)||(92875-92955)
chr3 (20-81)||(46186985-46187047)
chr3 (20-87)||(46185787-46185854)
[»] chr7 (3 HSPs)
chr7 (20-108)||(20900443-20900531)
chr7 (28-77)||(40905745-40905794)
chr7 (20-82)||(24322303-24322365)
[»] chr2 (2 HSPs)
chr2 (20-108)||(27276671-27276759)
chr2 (47-111)||(16887503-16887567)
[»] scaffold0039 (2 HSPs)
scaffold0039 (20-86)||(90645-90711)
scaffold0039 (36-87)||(90974-91026)
[»] chr4 (5 HSPs)
chr4 (20-87)||(3220546-3220613)
chr4 (20-87)||(3221376-3221444)
chr4 (20-72)||(41952358-41952411)
chr4 (28-77)||(34956323-34956372)
chr4 (28-77)||(50709031-50709080)
[»] chr1 (2 HSPs)
chr1 (20-92)||(41465260-41465332)
chr1 (21-86)||(50164662-50164728)
[»] scaffold0041 (1 HSPs)
scaffold0041 (28-77)||(44224-44273)
[»] chr5 (2 HSPs)
chr5 (20-72)||(27645879-27645931)
chr5 (20-82)||(33283975-33284037)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 117 - 604
Target Start/End: Complemental strand, 33616006 - 33615508
Alignment:
Q  117 aaaaagtgaaggtgtaagtgtttaagtattgaaaattgaaataaaaattacacatatccttctttttcgatagaatacatacatccatct-------agc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  33616006 aaaaagtgaaggtgtaagtgtttaagtattgaaaattgaaataaaaattacacatatccttctttttcgatagaatacatacatccatctgatttgaagc 33615907  T
Q  210 aagaattaaagatgaacaagactttctcaccttaccaatgcagtaatgcaatttcnnnnnnnnngctgacacactttagttagagctttcggcactttag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  33615906 aagaattaaagatgaacaagactttctcaccttaccaatgcagtaatgcaattttattttttttgctgacacactttagttagagctttcggcactttag 33615807  T
Q  310 ggtatctccacaactttatattctttacaccattatgaaactaatctttaagttgacaatgagattatcaannnnnnncacatggagttaagttagtttt 409  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||| |||||    
T  33615806 ggtatctccacaactttatattctttacaccattatgaagctaatctttaagttgacaatgagattatcaatttttttcacatggagttaagtt-gtttt 33615708  T
Q  410 ccgaatatgtgattgtaagaatgtattggtaatgcaataagtttatactcacatgaacacc---------gtttagttattcaaaccaactcactcaacc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||    ||||||||    
T  33615707 ccgaatatgtgattgtaagaatgtattggtaatgcaataagtttatactcacatgaacacctctaactatgtttagttattcaaacca----actcaacc 33615612  T
Q  501 cgtattttacccaaatcagtttaagttcaatccaaactaacccgttcaaatttaacgtggtttggttatgataacaaatttataatttcaaacatgtgaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33615611 cgtattttacccaaatcagtttaagttcaatccaaactaacccgttcaaatttaacgtggtttagttatgataacaaatttataatttcaaacatgtgaa 33615512  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 2358658 - 2358604
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcc 74  Q
    |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  2358658 agagtattataagaatgtattcttgatttgatctaaaggtcaaaataaactttcc 2358604  T

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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 55477975 - 55478065
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctccaatgtgaaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  55477975 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttagactctcccatgtgaaat 55478065  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 41885518 - 41885430
Alignment:
Q  23 gtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctccaatgtgaaatg 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||    
T  41885518 gtattataaaaatgtgttcttgatttgatctaaaagtcaatataaactttcccatggtgggaaagttttaggctctcccatgtgaaatg 41885430  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 92875 - 92955
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctcc 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||    
T  92875 agagtattgtaaaagtgtgttcttgatttgatctaaaggtcaatataaactttcccatcgtgggaaagttttaggctctcc 92955  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 46186985 - 46187047
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaa-ggtcaatataaactttcctatggtg 81  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46186985 agagtattataagaatgtgttcttgatttgatctaaagggtcaatataaactttcctatggtg 46187047  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 46185854 - 46185787
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaag 87  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||| ||||    
T  46185854 agagtattataaaaatgtgtttttgatttgatctaaaggtccaaataaactttcctatgatgggaaag 46185787  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 20900531 - 20900443
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctccaatgtgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| |||||||    
T  20900531 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcccatgatgggaaagttttaggctctcccatgtgaa 20900443  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 40905745 - 40905794
Alignment:
Q  28 ataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctat 77  Q
    |||||||||||||||| ||||||||||| |||||| || |||||||||||    
T  40905745 ataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctat 40905794  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 24322303 - 24322365
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtgg 82  Q
    ||||||| |||||||||||||| | ||||||||||| |||||| | || |||||| |||||||    
T  24322303 agagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaaaacctttcccatggtgg 24322365  T

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Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 27276759 - 27276671
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctccaatgtgaa 108  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||| ||||| |||||||    
T  27276759 agagtattataattatgtgttcttgatttgatctaaaggtcaatataaacttttccatcgtgggaaagttttaggctctcccatgtgaa 27276671  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 16887503 - 16887567
Alignment:
Q  47 ttgatctaaaggtcaatataaactttcctatggtggaaaagttttaggttctccaatgtgaaatg 111  Q
    |||||| ||||||||| ||||||||||| ||||||||||  ||||||  | ||| ||||||||||    
T  16887503 ttgatccaaaggtcaaaataaactttcccatggtggaaagattttagcctttcccatgtgaaatg 16887567  T

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Target: scaffold0039 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 90711 - 90645
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaa 86  Q
    |||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  90711 agagtattataagaatgtgtttttgatttgatctaaaggtccaaataaactttcctatggtggaaaa 90645  T

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Target: scaffold0039; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 90974 - 91026
Alignment:
Q  36 gtgttcttgatttgatctaaagg-tcaatataaactttcctatggtggaaaag 87  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||    
T  90974 gtgttcttgatttgatctaaaggatcaatataaattttcctatggtgggaaag 91026  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 3220613 - 3220546
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaag 87  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||    
T  3220613 agagtattataagaatgtgttcttgatttgatctaaaggtccaaataaactttcctatgatgggaaag 3220546  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3221376 - 3221444
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaa-ggtcaatataaactttcctatggtggaaaag 87  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| || |||| ||||    
T  3221376 agagtatcataagaatgtgttcttgatttgatctaaagggtcaatataaactttcccatcgtgggaaag 3221444  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 41952358 - 41952411
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaa-ggtcaatataaacttt 72  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  41952358 agagtattataagaatgtgtttttgatttgatctaaagggtcaatataaacttt 41952411  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 34956372 - 34956323
Alignment:
Q  28 ataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctat 77  Q
    |||||||||||||||| | ||||||||| |||||| || |||||||||||    
T  34956372 ataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctat 34956323  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 50709080 - 50709031
Alignment:
Q  28 ataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctat 77  Q
    |||||||||||||||| | ||||||||| |||||| || |||||||||||    
T  50709080 ataaaaatgtgttctttacttgatctaagggtcaaaattaactttcctat 50709031  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 41465332 - 41465260
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaagtttta 92  Q
    |||||||||||| ||||| ||| |||||||||||||| ||||| ||||||||||| ||||||| || ||||||    
T  41465332 agagtattataagaatgtattcctgatttgatctaaatgtcaaaataaactttcccatggtgggaaggtttta 41465260  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 50164662 - 50164728
Alignment:
Q  21 gagtattataaaaatgtgttcttgatttgatctaaaggtc-aatataaactttcctatggtggaaaa 86  Q
    |||||| ||||  |||||||||||||||||||||| |||| || |  ||||||||||||||||||||    
T  50164662 gagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcctatggtggaaaa 50164728  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 44273 - 44224
Alignment:
Q  28 ataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctat 77  Q
    |||||||||||||||| ||||||||||| |||||| || |||||||||||    
T  44273 ataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctat 44224  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 27645931 - 27645879
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaacttt 72  Q
    ||||| |||||| |||||||||||||||| ||||||||||||| | |||||||    
T  27645931 agagtgttataagaatgtgttcttgattttatctaaaggtcaaaacaaacttt 27645879  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 33283975 - 33284037
Alignment:
Q  20 agagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtgg 82  Q
    ||||||| |||||||||||||| | ||||||||||| |||||| | || |||||| |||||||    
T  33283975 agagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaaaacctttcccatggtgg 33284037  T

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