View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_low_4 (Length: 533)
Name: NF6661_low_4
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 517
Target Start/End: Complemental strand, 2354935 - 2354416
Alignment:
| Q |
11 |
acatcatcttacattgtagctaaaatgtgtgtagcgtggtttcagaattgatgagagaggaagagagagaacatgattaaaatcgaaaaccatatataag |
110 |
Q |
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||||||| ||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2354935 |
acatcatattacattgtagttaaaatatgtgtagtatggtttcaaaattgatgagagaggaagagagagaacatgattaaaatcgaaaacaatatataag |
2354836 |
T |
|
| Q |
111 |
tacataagtcaaatatcatatttgacattgtataaaatataattagaatgtgtggtgtaaaaattgctgaatgagagaaaaaatattaaaatcgtagatc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2354835 |
tacataagtcaaatatcatatttgacattgtataaaatataattagaatgtgtggtgtaaaaattgctgaatgagagaaaaaatatgaaaatcgtagatc |
2354736 |
T |
|
| Q |
211 |
acatatacatgcaatgttgatgtcgaattttgtttttgaaatatcgtgagtcgtgacatagtccatccctcacc--------------gggattcatttg |
296 |
Q |
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| T |
2354735 |
acatatacatgcaatgttgatgtcgaattttgtttttgaaatatcgtgagttgtgacatagtccat-cctcaccgactaatatagttagggattcatttg |
2354637 |
T |
|
| Q |
297 |
aaggatgaaacgtatttcttctttaggctcctaaaagttccgatcacatcaagtttgtaagaaaaaactaaaatgaaaaggatattctcctttttaattt |
396 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2354636 |
aaagatgaaacgtatttcttctttaggctcctaaaagttccgatcacatcaagttagtacgaaaaaactaaaatgaaaaggatattctcctttttaattt |
2354537 |
T |
|
| Q |
397 |
tgtgatgaactagtaattaagaagctaatatgggtgtggacagnnnnnnnnnnnnnnnnnnnncgccagaacttttggttccctcaaaagccaaaacttg |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2354536 |
tgtgatgaactagtaattaagaagctaatatgggtgtggacagaaaaataaaacaaaagaaaacgccagaacttttggttccctcaaaagccaaaacttg |
2354437 |
T |
|
| Q |
497 |
aataaccaatgaggtcctttt |
517 |
Q |
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||||||||||||||||||||| |
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| T |
2354436 |
aataaccaatgaggtcctttt |
2354416 |
T |
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