View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6661_low_5 (Length: 530)
Name: NF6661_low_5
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6661_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 32790243 - 32789735
Alignment:
| Q |
18 |
ctgctaaactagcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattgg |
117 |
Q |
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| T |
32790243 |
ctgctaaactagcttgtatgatgggttatggtggtttagcagcttatctttcagaaaagtctctagttgagcagcttggctggaaatatcaacttattgg |
32790144 |
T |
|
| Q |
118 |
aaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32790143 |
aaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattatgcgtgg |
32790044 |
T |
|
| Q |
218 |
gaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagttaagtagtttgag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32790043 |
gaattgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaacttagaagggaagctagtaagagaagtttagtagtttgag |
32789944 |
T |
|
| Q |
318 |
agggtatcgtgtataaaatataaataggataaataaggatga-cgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagcccttt |
416 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789943 |
aggatatcgtgtataaaacataaataggataaataaggatgagcgagggatctggtacatttgtttgttgtattttgaatggataaagtagcagcccttt |
32789844 |
T |
|
| Q |
417 |
gtgaaagggataccattagaggagagt---ctcctattttcattctttaaataaaac--nnnnnnnncttttcatttctttctattgattctccatccat |
511 |
Q |
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| T |
32789843 |
gtgaaagggataccattagaggagagtctcctcctattttcattctttaaataaaacttttttttttcttttcatttctttctattgattctccatccat |
32789744 |
T |
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| Q |
512 |
tgtcctttg |
520 |
Q |
| |
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||||||||| |
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| T |
32789743 |
tgtcctttg |
32789735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 48283281 - 48283083
Alignment:
| Q |
29 |
gcttgtatgatgggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcagct-------------tggctggaaatatcaac---tt |
112 |
Q |
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|||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||| || |
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| T |
48283281 |
gcttgtatgacgggttattatggtttagcagcttatctttcagaaaagtctctagttgagcagctcaatacatgagcttagctggaaatattaacggttt |
48283182 |
T |
|
| Q |
113 |
attggaaacaggcacgactgatcattgaattatgataatcttaccagggaccagctgattctgaaggaaactttagcagaaacatggcgtggagattat |
211 |
Q |
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|||||||||||||||| |||||||||||| | ||| || ||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| |
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| T |
48283181 |
attggaaacaggcacggctgatcattgaactctgagaaccttaccagggaccagctgattttgaaggaacctttagcagaaacatggtgaggagattat |
48283083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 48283032 - 48282975
Alignment:
| Q |
220 |
attgttaagatctaccattatagttatttagttaatgagagaagttaagtagttagaa |
277 |
Q |
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||||||| |||||| | |||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
48283032 |
attgttaggatctatccttatagttatttagttaagaagataagttaactagttagaa |
48282975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 50271416 - 50271467
Alignment:
| Q |
40 |
gggttatggtggtttagctgcttatctttcagaaaagtctctagttgagcag |
91 |
Q |
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||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
50271416 |
gggttatcatggcttagcagcttatctttcggaaaagtctctagttgagcag |
50271467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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