View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6661_low_7 (Length: 479)

Name: NF6661_low_7
Description: NF6661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6661_low_7
NF6661_low_7
[»] chr6 (13 HSPs)
chr6 (1-469)||(26890735-26891203)
chr6 (277-468)||(27713769-27713960)
chr6 (322-455)||(26853961-26854094)
chr6 (366-453)||(26631760-26631847)
chr6 (366-453)||(26737735-26737822)
chr6 (334-451)||(27422277-27422394)
chr6 (355-455)||(27651942-27652041)
chr6 (376-468)||(26966390-26966482)
chr6 (381-469)||(31289542-31289630)
chr6 (283-337)||(27651844-27651898)
chr6 (267-340)||(26641217-26641290)
chr6 (267-340)||(26747183-26747256)
chr6 (271-340)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (277-468)||(17984-18175)
[»] chr8 (2 HSPs)
chr8 (277-471)||(29269635-29269829)
chr8 (5-46)||(12072659-12072700)
[»] scaffold0003 (1 HSPs)
scaffold0003 (334-451)||(64969-65086)
[»] chr4 (5 HSPs)
chr4 (133-207)||(5078646-5078720)
chr4 (266-348)||(18682705-18682787)
chr4 (298-348)||(18650319-18650369)
chr4 (299-348)||(18718539-18718588)
chr4 (270-314)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (292-348)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 26891203 - 26890735
Alignment:
Q  1 gggacactctcgggaaggaatctgtcgcgagaaatagtatttttcttaacataaacattcaattatgatatttgcatttctttctcttcccgaatacata 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891203 gggacactctcgggaaggaatctgtcgcgagaaatagcatttttcttaacacaaacattcaattatgatatttgcatttctttctcttcccgaatacata 26891104  T
Q  101 tttacatgcacatatagcacattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattggga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891103 tttacatgcacatatagcacattctgctagatttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattggga 26891004  T
Q  201 caccaaacagtcgagcctcgtgtgtccagggtgaaaaggcattcattcacatcatcataccagaaagagattgtgatgaaccatctgtcagtatcacaat 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26891003 caccaaacagtcgagcctcttgtgtccagggtgaaaaggcattcattcacattatcataccagaaagagattgtgatgaaccatctgtcagtatcacaat 26890904  T
Q  301 atgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890903 atgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaag 26890804  T
Q  401 tgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26890803 tgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 277 - 468
Target Start/End: Original strand, 27713769 - 27713960
Alignment:
Q  277 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 376  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 27713868  T
Q  377 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 468  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  27713869 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 322 - 455
Target Start/End: Complemental strand, 26854094 - 26853961
Alignment:
Q  322 taaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataact 421  Q
    |||||| |||||||||||||||| |||| || ||||| ||||  |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  26854094 taaaaggaaattaatcatacatatatgtgtttctgctcctacgcaagttctgtctcagaaaactgacttggcagaaaattgtttttacacaagaataact 26853995  T
Q  422 tattaatcacaagagccattcggtgttgttgctg 455  Q
    ||||||||||||||||||| | ||||||||||||    
T  26853994 tattaatcacaagagccatacagtgttgttgctg 26853961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 26631847 - 26631760
Alignment:
Q  366 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 453  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26631847 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26631760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 26737822 - 26737735
Alignment:
Q  366 aagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgc 453  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |  |||||||||    
T  26737822 aagttctgtctcagaaaacagatttgggagaaaagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgc 26737735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 451
Target Start/End: Original strand, 27422277 - 27422394
Alignment:
Q  334 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 433  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  27422277 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 27422376  T
Q  434 gagccattcggtgttgtt 451  Q
    ||||||| | ||||||||    
T  27422377 gagccatacagtgttgtt 27422394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 27651942 - 27652041
Alignment:
Q  355 tgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgct 454  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||  || | |||||||||||    
T  27651942 tgctgctaaacaagttctgtctca-aaaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgct 27652040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 468
Target Start/End: Complemental strand, 26966482 - 26966390
Alignment:
Q  376 tcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 468  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||| | || |||||||||  ||||| |||||    
T  26966482 tcagaaaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 381 - 469
Target Start/End: Complemental strand, 31289630 - 31289542
Alignment:
Q  381 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctg 469  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  31289630 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 27651844 - 27651898
Alignment:
Q  283 atctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatc 337  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaatc 27651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 26641290 - 26641217
Alignment:
Q  267 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 340  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26641290 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 26747256 - 26747183
Alignment:
Q  267 gagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 340  Q
    |||||||||||||||||||||||| ||||||| |||||| |||| |||||| || ||||| ||| |||||||||    
T  26747256 gagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcata 26747183  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 26828784 - 26828715
Alignment:
Q  271 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 340  Q
    |||||| |||| |||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26828784 ttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 26828715  T

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Target: scaffold0349 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 18175 - 17984
Alignment:
Q  277 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 376  Q
    |||| |||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaattaatcatacatacatatgttgttgctgctacacaagttctgtct 18076  T
Q  377 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttct 468  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||| | ||||||||||||  ||||| |||||    
T  18075 cagaaaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

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Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 277 - 471
Target Start/End: Original strand, 29269635 - 29269829
Alignment:
Q  277 tgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgttttgctgctgctacataagttctgtct 376  Q
    |||| |||| ||| |||||||||||| |||| ||||||||| | ||||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaattaatcatgcatacatatgttgttgctgctacacaagttctgtct 29269734  T
Q  377 cagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaggttctgct 471  Q
    | ||||| |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||||  ||||| ||||||||    
T  29269735 ctgaaaagtgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 12072700 - 12072659
Alignment:
Q  5 cactctcgggaaggaatctgtcgcgagaaatagtatttttct 46  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  12072700 cactctcgggaaggaaactgtcgcgagaaatagcatttttct 12072659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 451
Target Start/End: Complemental strand, 65086 - 64969
Alignment:
Q  334 aatcatacatacatgttttgctgctgctacataagttctgtctcagaaaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaa 433  Q
    |||||||||||||| | ||| |||||| ||| |||||||||  ||||||| ||||||||||||||| || ||||||| ||||||| ||||||||| ||||    
T  65086 aatcatacatacatttgttgttgctgcgacacaagttctgttgcagaaaaatgatttggcagaaaactgcttttacacaagaataccttattaattacaa 64987  T
Q  434 gagccattcggtgttgtt 451  Q
    ||||||| | ||||||||    
T  64986 gagccatacagtgttgtt 64969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 5078720 - 5078646
Alignment:
Q  133 ttgtgatatttacacctaaaaccttacaattgaaacatcttcccaccatatatgtcaatgaattgggacaccaaa 207  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||| | ||||||||||||||||||||||    
T  5078720 ttgtgatatttacacctaaaaacttacaattgagatgtcttcccaccatagaagtcaatgaattgggacaccaaa 5078646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 18682705 - 18682787
Alignment:
Q  266 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 348  Q
    ||||||||||| ||||||||| || |||| | |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18682705 agagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 18650319 - 18650369
Alignment:
Q  298 aatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 348  Q
    |||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18650369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 18718539 - 18718588
Alignment:
Q  299 atatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatg 348  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  18718539 atatgtacatactcttgtattcttaaaagcaatttaatcatacatacatg 18718588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  270 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 314  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 946412 - 946469
Alignment:
Q  292 tatcacaatatgtacaaactcttgta-ctcttaaaagcaaattaatcatacatacatg 348  Q
    ||||| |||||||||||||||||| | |||||||||||||  |||||| |||||||||    
T  946412 tatcaaaatatgtacaaactcttgcatctcttaaaagcaatctaatcacacatacatg 946469  T

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