View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6662_high_1 (Length: 353)
Name: NF6662_high_1
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6662_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 17844975 - 17844650
Alignment:
| Q |
9 |
ggacatcatcatagatgcaagcttcatatataattgggtaatcattgttgaggttgagaaatgtgaaaaaattgtatcctaaaaaattgggacttgtaac |
108 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17844975 |
ggacataattatagatgcaagcttcacatataattgggtaatcatccttgaggttgagaaatgtgaaaaaattgtatcctaaaaaattgggacttgtaac |
17844876 |
T |
|
| Q |
109 |
tattaatttatacatcttccaacatcttagctaaatcgtattcataaaaatgactatcacattactctaaagcaaattcagattttcaattttcataaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17844875 |
tattaatttatacatcttccaacatcttagctaaattatattcataaaaatcactatcacattactctaaagcaaattaagattttcaattttcataaaa |
17844776 |
T |
|
| Q |
209 |
atgttgtaaatctgattcaaatggaacaagcgaatcgaataaatgaaccatac--nnnnnnnnntcagaaatcagtcgaacaaaggagaatataacgaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
17844775 |
atgttgtaaatctgattcaaatggaacaagcgaatcgaataaatgaaccatacaaaaaaaaaaatcacaaatcaatcgaacaaaggagaatataaggaat |
17844676 |
T |
|
| Q |
307 |
atagatgaatttacctgagctgaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
17844675 |
atagatgaatttacctgagctgaaaa |
17844650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University