View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6662_high_5 (Length: 280)
Name: NF6662_high_5
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6662_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 34315447 - 34315185
Alignment:
| Q |
18 |
gttatcgcgttgactcgcgctttgaagattctcggatcggaaggatcgctccaatgaacagaaccaacgtggcgactaccggagaaattgtagaagtgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34315447 |
gttatcgcgttgactcgcgctttgaagattctcggatcggaaggatcgctccaatgaacagaaccaacgtggcgactaccggagaaattgtagaagtgta |
34315348 |
T |
|
| Q |
118 |
atccagcatcagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34315347 |
atccagcatcagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggat |
34315248 |
T |
|
| Q |
218 |
tagattccagtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34315247 |
tagattccagtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccgc |
34315185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 40947534 - 40947382
Alignment:
| Q |
127 |
cagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggattagattcca |
226 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| || | ||| |||||| ||||||||||||||||||| |
|
|
| T |
40947534 |
cagattcagttccagcggcggcactctctggccagactctgcaaattgaattgatttcatcgagatgtgaacggacggttacggaatggattagattcca |
40947435 |
T |
|
| Q |
227 |
gtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccg |
279 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
40947434 |
gtcgtagctggagagttgaccaccgatagcaatccaagtggaaccattctccg |
40947382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 26956264 - 26956112
Alignment:
| Q |
127 |
cagattcagttccaacggcggcaatctccggccagactctgcaaattgaattgatctcatcgaggtgagtacgaacggttgcggaatggattagattcca |
226 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| || | ||| |||||| ||||||||||||||||||| |
|
|
| T |
26956264 |
cagattcagttccagcggcggcactctctggccagactctgcaaattgaattgatttcatcgagatgtgaacggacggttacggaatggattagattcca |
26956165 |
T |
|
| Q |
227 |
gtcgtagctggagagttgaccaccgtgagcaatccaaacggaaccgttctccg |
279 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
26956164 |
gtcgtagctggtgagttgacctccgatagcaatccaagtggaaccattctccg |
26956112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University