View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6662_high_6 (Length: 251)
Name: NF6662_high_6
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6662_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34315043 - 34314803
Alignment:
| Q |
1 |
ttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaaaacc |
100 |
Q |
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| T |
34315043 |
ttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaaaacc |
34314944 |
T |
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| Q |
101 |
gggtttgggtcgttggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaagagttgtttcgaagagcttaccgc |
200 |
Q |
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| T |
34314943 |
gggtttgggtcgttggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaagagttgtttcgaagagcttaccgc |
34314844 |
T |
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| Q |
201 |
caacgtttagttttatgcggtcagttacgttggagtctgtg |
241 |
Q |
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| T |
34314843 |
caacgttgagttttatgcggtcagttacgttggagtctgtg |
34314803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 22061025 - 22061248
Alignment:
| Q |
14 |
aagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttctgggtcgcggtctatgaaaaccgggtttgggtcgt |
113 |
Q |
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| T |
22061025 |
aagcggcggctagtggagggaaggtggttggtgcggaggagagagaggaagacggagaagatttatgggttgcggtctatgaaaatcaaatttgggtcgt |
22061124 |
T |
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| Q |
114 |
tggaaaaacggtttgataatgcgaaaaggagagagtctggaccgccggaccggattgtggaaa-gagttgtttcgaagagcttaccgccaacgtttagtt |
212 |
Q |
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| T |
22061125 |
tgaaaaaacggcttgagagtgcgaagaagagagaatctggatcaccggacaggattgtcgaaaggggttgtttcgaagagcttatcgccaac-----gtt |
22061219 |
T |
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| Q |
213 |
ttatgcggtcagttacgttggagtctgtg |
241 |
Q |
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| T |
22061220 |
ttatgcggtcagttgcgtttaagtctgtg |
22061248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 11201185 - 11201122
Alignment:
| Q |
9 |
tggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagagaggaagacggagaa |
72 |
Q |
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| T |
11201185 |
tggagaagcggcggacgatggaggggaggtggttggtgtggaggagagacaggtagacagagaa |
11201122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26955971 - 26955914
Alignment:
| Q |
1 |
ttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagag |
58 |
Q |
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| T |
26955971 |
ttcttgtttggagaagcggcgggcagtggaggggaggtggttggcgcggaggagagag |
26955914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40947241 - 40947184
Alignment:
| Q |
1 |
ttcttgtttggagaagcggcgggcagtggagggaaggtggttggtgcggaggagagag |
58 |
Q |
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| T |
40947241 |
ttcttgtttggagaagcggcgggcagtggaggggaggtggttggcgcggaggagagag |
40947184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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