View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6662_low_11 (Length: 233)

Name: NF6662_low_11
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6662_low_11
NF6662_low_11
[»] chr4 (42 HSPs)
chr4 (1-148)||(7001907-7002042)
chr4 (145-220)||(7002096-7002171)
chr4 (1-133)||(53200542-53200674)
chr4 (1-135)||(38812575-38812709)
chr4 (1-111)||(3649691-3649801)
chr4 (1-117)||(26083394-26083510)
chr4 (1-133)||(47361313-47361444)
chr4 (2-133)||(20517921-20518052)
chr4 (1-104)||(22318312-22318415)
chr4 (1-99)||(20802464-20802562)
chr4 (1-99)||(33176965-33177063)
chr4 (1-99)||(36885987-36886085)
chr4 (1-111)||(44324263-44324373)
chr4 (1-99)||(44649097-44649195)
chr4 (1-95)||(49152037-49152131)
chr4 (1-133)||(9807211-9807342)
chr4 (1-117)||(11056097-11056213)
chr4 (1-117)||(28115307-28115422)
chr4 (1-133)||(37865808-37865940)
chr4 (1-133)||(47642390-47642522)
chr4 (1-133)||(50178391-50178523)
chr4 (1-99)||(55065265-55065364)
chr4 (1-103)||(16320574-16320676)
chr4 (1-135)||(33552739-33552873)
chr4 (1-99)||(36497272-36497370)
chr4 (1-111)||(36743609-36743719)
chr4 (5-99)||(39078720-39078814)
chr4 (1-99)||(42772843-42772941)
chr4 (1-111)||(46680431-46680541)
chr4 (1-95)||(52949775-52949869)
chr4 (1-133)||(23521935-23522067)
chr4 (1-133)||(32181318-32181450)
chr4 (1-117)||(50729457-50729573)
chr4 (39-99)||(56487215-56487275)
chr4 (1-99)||(24002394-24002492)
chr4 (1-99)||(24210374-24210472)
chr4 (1-99)||(25978545-25978642)
chr4 (2-99)||(42870027-42870124)
chr4 (1-133)||(2725032-2725164)
chr4 (1-33)||(6776633-6776665)
chr4 (1-33)||(37931975-37932007)
chr4 (1-33)||(50186583-50186615)
[»] chr8 (25 HSPs)
chr8 (1-133)||(15001518-15001650)
chr8 (1-133)||(30542943-30543075)
chr8 (1-103)||(10656637-10656739)
chr8 (1-99)||(29563181-29563279)
chr8 (1-99)||(30501197-30501295)
chr8 (1-133)||(7591368-7591500)
chr8 (1-133)||(8672976-8673108)
chr8 (1-133)||(37664204-37664336)
chr8 (1-133)||(41548670-41548802)
chr8 (1-99)||(29611010-29611108)
chr8 (1-133)||(14004965-14005097)
chr8 (1-133)||(41709829-41709961)
chr8 (77-133)||(45114183-45114239)
chr8 (1-99)||(6386628-6386726)
chr8 (1-99)||(22756366-22756464)
chr8 (1-99)||(29672278-29672376)
chr8 (1-99)||(37618347-37618445)
chr8 (1-133)||(10467116-10467248)
chr8 (1-117)||(39642935-39643051)
chr8 (1-99)||(27104011-27104109)
chr8 (1-99)||(31513538-31513636)
chr8 (77-139)||(32019916-32019978)
chr8 (77-117)||(32303545-32303585)
chr8 (1-33)||(32303606-32303638)
chr8 (11-99)||(37474762-37474850)
[»] chr3 (23 HSPs)
chr3 (1-98)||(34351303-34351400)
chr3 (1-117)||(49748827-49748943)
chr3 (1-135)||(29584928-29585062)
chr3 (1-111)||(39052760-39052870)
chr3 (1-117)||(21373983-21374099)
chr3 (1-133)||(24571334-24571466)
chr3 (5-109)||(34026724-34026828)
chr3 (1-133)||(50386356-50386488)
chr3 (1-99)||(3864609-3864707)
chr3 (1-133)||(12349071-12349203)
chr3 (1-117)||(19906815-19906931)
chr3 (1-117)||(33364694-33364810)
chr3 (1-135)||(21221259-21221392)
chr3 (1-111)||(24721538-24721648)
chr3 (1-99)||(25860355-25860453)
chr3 (1-99)||(28675843-28675941)
chr3 (1-99)||(31882956-31883054)
chr3 (7-133)||(41682953-41683079)
chr3 (1-95)||(51925146-51925240)
chr3 (1-99)||(25927261-25927359)
chr3 (1-99)||(38213407-38213505)
chr3 (1-99)||(51259714-51259812)
chr3 (5-95)||(51296638-51296728)
[»] chr5 (24 HSPs)
chr5 (1-117)||(4689626-4689742)
chr5 (1-133)||(39918559-39918691)
chr5 (1-133)||(2351732-2351864)
chr5 (1-99)||(8136889-8136987)
chr5 (1-135)||(31770501-31770635)
chr5 (1-133)||(32528767-32528899)
chr5 (1-119)||(6284224-6284342)
chr5 (1-111)||(41459641-41459750)
chr5 (1-99)||(41790409-41790506)
chr5 (1-133)||(11963393-11963525)
chr5 (1-101)||(34794939-34795039)
chr5 (1-133)||(40489389-40489521)
chr5 (1-99)||(7523224-7523322)
chr5 (1-99)||(21739107-21739205)
chr5 (1-99)||(28090466-28090564)
chr5 (1-109)||(553449-553557)
chr5 (3-111)||(31880010-31880118)
chr5 (1-99)||(7770225-7770323)
chr5 (1-99)||(17031209-17031307)
chr5 (1-99)||(18470374-18470472)
chr5 (1-99)||(35701329-35701427)
chr5 (1-70)||(5571619-5571688)
chr5 (1-33)||(5673191-5673223)
chr5 (1-99)||(27839020-27839117)
[»] scaffold0650 (1 HSPs)
scaffold0650 (1-99)||(1589-1687)
[»] chr7 (21 HSPs)
chr7 (1-111)||(21784927-21785037)
chr7 (1-111)||(1870191-1870301)
chr7 (1-133)||(10932464-10932596)
chr7 (1-133)||(41211107-41211239)
chr7 (1-99)||(329526-329624)
chr7 (1-99)||(38301398-38301496)
chr7 (1-135)||(44748751-44748885)
chr7 (1-99)||(18386581-18386678)
chr7 (1-99)||(36769510-36769608)
chr7 (1-99)||(43158627-43158725)
chr7 (1-99)||(47316639-47316737)
chr7 (1-99)||(47953246-47953344)
chr7 (1-133)||(43368257-43368389)
chr7 (1-95)||(11250673-11250767)
chr7 (1-99)||(11321826-11321924)
chr7 (1-135)||(34519564-34519698)
chr7 (1-99)||(40753211-40753309)
chr7 (1-98)||(30849188-30849285)
chr7 (65-125)||(16027842-16027902)
chr7 (1-33)||(23349298-23349330)
chr7 (1-33)||(43189249-43189281)
[»] chr6 (21 HSPs)
chr6 (1-111)||(18597125-18597235)
chr6 (1-99)||(3259735-3259833)
chr6 (1-111)||(10324078-10324188)
chr6 (77-133)||(14925401-14925457)
chr6 (1-99)||(166902-167000)
chr6 (1-111)||(11675341-11675451)
chr6 (1-99)||(15276916-15277014)
chr6 (1-99)||(24203414-24203512)
chr6 (1-99)||(24242716-24242814)
chr6 (13-133)||(9200332-9200453)
chr6 (1-117)||(3379762-3379878)
chr6 (1-99)||(8177861-8177958)
chr6 (1-99)||(11279180-11279278)
chr6 (184-214)||(29036349-29036379)
chr6 (1-99)||(32132359-32132457)
chr6 (80-133)||(14925162-14925215)
chr6 (40-104)||(5650679-5650742)
chr6 (77-133)||(11613736-11613792)
chr6 (1-33)||(14808046-14808078)
chr6 (1-33)||(31870145-31870177)
chr6 (1-33)||(34684028-34684060)
[»] chr1 (35 HSPs)
chr1 (1-133)||(41967830-41967962)
chr1 (1-135)||(42512749-42512883)
chr1 (1-117)||(7837194-7837310)
chr1 (1-133)||(31004193-31004325)
chr1 (1-133)||(51264556-51264688)
chr1 (1-132)||(6029283-6029414)
chr1 (1-111)||(5109789-5109899)
chr1 (1-111)||(16386915-16387025)
chr1 (1-99)||(16437423-16437521)
chr1 (1-99)||(17888009-17888107)
chr1 (1-130)||(7183979-7184108)
chr1 (1-133)||(844705-844837)
chr1 (1-133)||(1351416-1351548)
chr1 (5-133)||(6711027-6711155)
chr1 (1-133)||(11772613-11772745)
chr1 (1-133)||(16451188-16451320)
chr1 (3-99)||(16704789-16704885)
chr1 (1-133)||(32270414-32270546)
chr1 (1-133)||(39281955-39282087)
chr1 (1-135)||(24339617-24339752)
chr1 (1-127)||(3560137-3560263)
chr1 (1-99)||(6144001-6144099)
chr1 (1-99)||(28340318-28340416)
chr1 (1-99)||(41972972-41973070)
chr1 (1-99)||(45490890-45490988)
chr1 (1-134)||(13994055-13994188)
chr1 (1-133)||(26118196-26118328)
chr1 (1-119)||(7837435-7837553)
chr1 (1-99)||(30105695-30105793)
chr1 (2-132)||(39792869-39792999)
chr1 (1-117)||(1601234-1601348)
chr1 (1-33)||(25539916-25539948)
chr1 (1-33)||(42705319-42705351)
chr1 (63-99)||(49303369-49303405)
chr1 (1-133)||(50304712-50304844)
[»] chr2 (27 HSPs)
chr2 (1-99)||(38623244-38623342)
chr2 (1-133)||(9732836-9732968)
chr2 (5-133)||(35114841-35114969)
chr2 (1-133)||(37308707-37308839)
chr2 (1-117)||(40832391-40832507)
chr2 (1-99)||(32766444-32766542)
chr2 (1-111)||(44284681-44284791)
chr2 (1-130)||(6896220-6896349)
chr2 (1-133)||(33889295-33889427)
chr2 (1-133)||(7761479-7761611)
chr2 (1-133)||(34338862-34338994)
chr2 (1-104)||(7258949-7259052)
chr2 (1-104)||(15303175-15303278)
chr2 (1-99)||(16104326-16104424)
chr2 (1-99)||(26981649-26981747)
chr2 (1-99)||(33366662-33366760)
chr2 (5-99)||(41366050-41366144)
chr2 (1-99)||(42706411-42706509)
chr2 (1-133)||(18685888-18686020)
chr2 (1-133)||(42365629-42365761)
chr2 (58-117)||(4641623-4641682)
chr2 (5-99)||(5278774-5278868)
chr2 (77-133)||(9717329-9717385)
chr2 (1-33)||(27462808-27462840)
chr2 (77-133)||(37003797-37003853)
chr2 (1-33)||(37003874-37003906)
chr2 (1-133)||(38992977-38993109)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-117)||(5367-5484)
[»] scaffold0169 (2 HSPs)
scaffold0169 (1-99)||(18000-18098)
scaffold0169 (1-33)||(12548-12580)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-99)||(42896-42994)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-99)||(15224-15322)
[»] scaffold0957 (1 HSPs)
scaffold0957 (3-139)||(2402-2538)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-99)||(23627-23725)
[»] scaffold0729 (1 HSPs)
scaffold0729 (1-33)||(4591-4623)
[»] scaffold0360 (1 HSPs)
scaffold0360 (1-33)||(15393-15425)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-133)||(13599-13731)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 7001907 - 7002042
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| |||| |||||||  ||||| | ||||||||||||||||||||||||||            ||||||    
T  7001907 aaagttgtgttgtggtttggtgagggacaaaaatttttgtttttgttctgtctcttgcctcgagtttgtcttatctctgaaa------------tcaaat 7001994  T
Q  101 actaaacaacttaagttatcatgtcctgtcctttaatttgtaagttag 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7001995 actaaacaacttaagttatcatgtcctgtcctttaatttgtaagttag 7002042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 7002096 - 7002171
Alignment:
Q  145 ttagacatacctagaaaactaataacctgttagttttcatagttagtactccctccgtccctatatataaccccct 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7002096 ttagacatacctagaaaactaataaactgttagttttcatagttagtactccctccgtccctatatataaccccct 7002171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 53200674 - 53200542
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| |||||| ||   |||||||| |||   | ||||| ||||| || | |||||||||||||||| |||||||||     
T  53200674 aaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcatgttccttgcctccagtttatcctgtctctgaaacagttttgcaaatcaaac 53200575  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||||||| || ||||||| ||||| |||||||    
T  53200574 actaaacagctgaagttattatgtcttgtcctt 53200542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 38812575 - 38812709
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  38812575 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 38812674  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    |||  ||||||  |||| | |||||||||||||||    
T  38812675 actggacaactagagttgttatgtcctgtccttta 38812709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3649691 - 3649801
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| |||||| |||  |||||||| ||||  | ||||  |||||||  | || |||||||||||||||||||||||     
T  3649691 aaagttgtgctgtggtttggtgagggacaaaaattttagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaac 3649790  T
Q  101 actaaacaact 111  Q
    |||| ||||||    
T  3649791 actagacaact 3649801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26083394 - 26083510
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||| || |||||||||||||||| |||||| ||   |||||||| ||||  | ||||| |||||||  | || |||||||| ||||||||||||||     
T  26083394 aaagttatgctgtggtttggtgagggacaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaac 26083493  T
Q  101 actaaacaacttaagtt 117  Q
    ||||||||||| |||||    
T  26083494 actaaacaactgaagtt 26083510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 47361444 - 47361313
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| | | | ||||||| ||||  | |||||  ||||||| | |  |||||||||||||||||||||||     
T  47361444 aaagttgtgttgtggtttggtgagggacaaaaa-tatgaattttgtcttgtcccttgcctccggtttgtcctgtacctgaaacagttttacaaatcaaac 47361346  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  47361345 actggacaactaaagttgttctgtcctgtcctt 47361313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 20518052 - 20517921
Alignment:
Q  2 aagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaata 101  Q
    ||||| || |||| ||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||||| |  ||||||||||||||||||||||| |    
T  20518052 aagttatgctgtgatttggtgagggacaaaaatatgactttttgtcctgtctcttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaaca 20517953  T
Q  102 ctaaacaacttaagttatcatgtcctgtcctt 133  Q
    || |||||||  |||| |  ||||||||||||    
T  20517952 ctgaacaactagagttgttctgtcctgtcctt 20517921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22318415 - 22318312
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| ||  | ||||||| ||||| | ||||  |||||||  | || || ||||||||||||||||||||     
T  22318415 aaagttgtgttgtggtttggtgagggacaaaaatttcaaattttgtcctgtctcttgccttcagtttgttctgtccctaaaacagttttacaaatcaaac 22318316  T
Q  101 acta 104  Q
    ||||    
T  22318315 acta 22318312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 20802562 - 20802464
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  20802562 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 20802464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33177063 - 33176965
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  33177063 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 33176965  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36885987 - 36886085
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  36885987 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 36886085  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 44324373 - 44324263
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   ||||||||  |||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  44324373 aaagttgtgctgtggtttggtgagggacaaaaatatcagtttttgtcccgtcttttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaac 44324274  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  44324273 actgaacaact 44324263  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 44649195 - 44649097
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||||||| |||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  44649195 aaagttgtgttgtggtttgctgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 44649097  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 49152131 - 49152037
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaat 95  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||||||||  | || || |||||||||| |  |||||||||||||||||||    
T  49152131 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcgtgtcccttgcatccagtttgtcttgtacctgaaacagttttacaaat 49152037  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 9807211 - 9807342
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||  |||||||||||||||  |||||| ||   |||||||| |||| || || || |||||||||| |  |||||||||||||||||||||||     
T  9807211 aaagttgtactgtggtttggtgagga-caaaaagttgagtttttgtcctgtccattgcatctagtttgtcttgtacctgaaacagttttacaaatcaaac 9807309  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| || |||||| |||||    
T  9807310 actggacaactgaagttgtcctgtcctatcctt 9807342  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11056097 - 11056213
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||||| |||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  11056097 aaagttgtgttgtggtttggtaagggacaaaaatatcagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 11056196  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  11056197 actggacaactgaagtt 11056213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28115307 - 28115422
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |  |||||| || ||||  | ||||| |||||||||| |  |  ||||||||||||||||||||     
T  28115307 aaagttgtgttgtggtttggtgagggacaaaaatatcaatttttctcctgtcccttgcctccagtttgtcttgt-accaaaacagttttacaaatcaaac 28115405  T
Q  101 actaaacaacttaagtt 117  Q
    |||| ||||||| ||||    
T  28115406 actagacaacttgagtt 28115422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 37865808 - 37865940
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||| ||||||||||| ||||||  |   |||||||| ||||| | ||||| || ||||| | |  |||||||||||||||||||||||     
T  37865808 aaagttgtgttgtgatttggtgagggacaaaaatatgagtttttgtcatgtctcttgcctccagattgtcatgtacctgaaacagttttacaaatcaaac 37865907  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| | ||||| |||||||    
T  37865908 actggacaactagagttgttatgtcgtgtcctt 37865940  T

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Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 47642522 - 47642390
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| |||||| ||||||  |   ||||| || ||||| |  |||| |||||||| | |  |||||||||||||||||||||||     
T  47642522 aaagttgtgttgtggtttgctgagggacaaaaatatcagtttttatcttgtctcttacctccagtttgtcctgtgcctgaaacagttttacaaatcaaac 47642423  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| |||||||  |||| |  ||||||||||||    
T  47642422 actgaacaactggagttgttctgtcctgtcctt 47642390  T

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Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 50178523 - 50178391
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||||||||| |||||  ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  50178523 aaagttgtgctgtggtttgctgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 50178424  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  50178423 actggacaactgaagttgttctgtcctgtcctt 50178391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 55065364 - 55065265
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgt-ctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||| |  || |||| |||||||||| |  |||||||||||||||||||||||    
T  55065364 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgccctccagtttgtcttgtacctgaaacagttttacaaatcaaa 55065265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16320574 - 16320676
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   ||||| || ||||  | ||||| ||||| || |||  |||| |||||||||||||||||||    
T  16320574 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttatcctgtcccttgcctccagtttttcctatacctgagacagttttacaaatcaaat 16320673  T
Q  101 act 103  Q
    |||    
T  16320674 act 16320676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 33552873 - 33552739
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | || || | |||||| | |  |||||||||||||||||||||||     
T  33552873 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcttgtcccttgcatccaatttgtcctgtacctgaaacagttttacaaatcaaac 33552774  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    ||| |||||||  |||| |  ||||||||||||||    
T  33552773 actgaacaactagagttgttttgtcctgtccttta 33552739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36497272 - 36497370
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||| | | ||| |||||||| | |  |||||||||||||||||||||||    
T  36497272 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaa 36497370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 36743719 - 36743609
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||| |||||||||||| ||||||  |  ||||||||| ||||  | ||||| |||||||| | |  ||||||||||||||||| |||||     
T  36743719 aaagttgtgctgtagtttggtgagggacaaaaatatgaatttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaattcaaac 36743620  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  36743619 actgaacaact 36743609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 39078720 - 39078814
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||| |||||| ||    ||||||| | ||| | ||||| |||||||  | || |||||||||||||||||||||||    
T  39078720 ttgtgttgtggtttggtgagggacaaaaatttcaggttttgtcctatctcttgcctccagtttgttctgtccctgaaacagttttacaaatcaaa 39078814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42772843 - 42772941
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||||||||||| || ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||| ||||||||||||||    
T  42772843 aaagttgtgttgtggtttggtgaaggacaaaaatatgagtttttgtcttgtctcttgcctcaagtttgtcatgtacctgaaacaattttacaaatcaaa 42772941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 46680541 - 46680431
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||||||||||| |||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  46680541 aaagttgtgctgtggtttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 46680442  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  46680441 actgaacaact 46680431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 52949775 - 52949869
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaat 95  Q
    ||||||||||||||||||| |||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||    
T  52949775 aaagttgtgttgtggtttgctgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaat 52949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 23521935 - 23522067
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| | ||  | || || |||||||| | |  |||||||||||||||||||||||     
T  23521935 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatcccttgcttccagtttgtcctgtacctgaaacagttttacaaatcaaac 23522034  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  23522035 actggacaactagagttgttttgtcctgtcctt 23522067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 32181318 - 32181450
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||  |||||||||||||||| ||||||  |   |||||||| ||||  | || || |||||||| | |   ||||||||||||||||||||||     
T  32181318 aaagttgtactgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcatctagtttgtcctgtacttgaaacagttttacaaatcaaac 32181417  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| ||||||||| |||||    
T  32181418 actggacaactaaagttgtcatgtcctatcctt 32181450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 50729573 - 50729457
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||  | |||||| ||   |||||||| ||||  | ||||| |||||||  | || |||||||||||||||||||||||     
T  50729573 aaagttgtgctgtggtttggtgatagacaaaaatttcagtttttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaac 50729474  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  50729473 actggacaactgaagtt 50729457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 56487275 - 56487215
Alignment:
Q  39 atttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||  | ||||| |||||||| ||| ||||||||||||||||||||||||    
T  56487275 atttttgtcctgtcccttgcctcaagtttgtcctatatctgaaacagttttacaaatcaaa 56487215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24002394 - 24002492
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||| |||||||||||||||    
T  24002394 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaactgttttacaaatcaaa 24002492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24210374 - 24210472
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||| ||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  24210374 aaagttgtgctgtggtttggtgagggacaataatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 24210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25978642 - 25978545
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| | |||||||||||||| |||||| ||   |||||||| |||  || ||||| | |||||| | || |||||||||||||||||||||||    
T  25978642 aaagttgtgatatggtttggtgagggacaaaaatttcagtttttgtcctgttcattgcctccaatttgtcatgtc-ctgaaacagttttacaaatcaaa 25978545  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 42870027 - 42870124
Alignment:
Q  2 aagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||| |||||||||||||||| ||||||  |   |||||||| ||||| | ||| | |||||||| | |  | |||||||||||||||||||||    
T  42870027 aagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcccccagtttgtcctgtaccagaaacagttttacaaatcaaa 42870124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2725164 - 2725032
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  || ||| ||||||||||||||||     
T  2725164 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctaaaagagttttacaaatcaaac 2725065  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  2725064 actggacaactagagttgttctgtcctgtcctt 2725032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6776633 - 6776665
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  6776633 aaagttgtgttgtggtttggtgagggacaaaaa 6776665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37931975 - 37932007
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  37931975 aaagttgtgttgtggtttggtgagggacaaaaa 37932007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50186583 - 50186615
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  50186583 aaagttgtgttgtggtttggtgagggacaaaaa 50186615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 15001518 - 15001650
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| ||   |||||||  ||||||| ||||| |||||||| | || |||||||||||||||||||||||     
T  15001518 aaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtttgtcctgtccctgaaacagttttacaaatcaaac 15001617  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  15001618 actggacaactgaagttgttctgtcctgtcctt 15001650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 30543075 - 30542943
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| |||| || ||||| |||||||| | |  |||||||||||||||||||||||     
T  30543075 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtccattgcctccagtttgtcatgtacctgaaacagttttacaaatcaaac 30542976  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| | ||||| |||||||    
T  30542975 actggacaactaaagttgttatgtcatgtcctt 30542943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10656739 - 10656637
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||| |||| || |||||||||   |||||||| ||||| | ||||| |||||||| | ||||| ||| || ||||||||||||||    
T  10656739 aaagttgtgttgtggttttgtgaaggacaaaaaattcagtttttgtcctgtcttttgcctctagtttgtcatgtctctaaaaaagatttacaaatcaaat 10656640  T
Q  101 act 103  Q
    |||    
T  10656639 act 10656637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 29563279 - 29563181
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | |||||||||||||| | |  |||||||||||||||||||||||    
T  29563279 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctcgagtttgtcctgtacctgaaacagttttacaaatcaaa 29563181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 30501197 - 30501295
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  | | |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  30501197 aaagttgtgctgtggtttggtgagggacaaaaatatgtgtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 30501295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7591500 - 7591368
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| |||||  ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  7591500 aaagttgtgttgtggtttgctgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 7591401  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  7591400 actggacaactgaagttgttctgtcctgtcctt 7591368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8673108 - 8672976
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  8673108 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaac 8673009  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  8673008 actggacaactatagttgttttgtcctgtcctt 8672976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37664336 - 37664204
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  37664336 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaac 37664237  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  ||||||  ||||||||||||    
T  37664236 actggacaactagagttattctgtcctgtcctt 37664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41548670 - 41548802
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||| || |||||  ||||||  |   |||||||| ||||| | ||||| |||||||| | | ||||||||||||||||||||||||     
T  41548670 aaagttgtgttgtggtctgctgaggtacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcatgtatctgaaacagttttacaaatcaaac 41548769  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  41548770 actggacaactgaagttgttctgtcctgtcctt 41548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 29611108 - 29611010
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||| ||||| |||||| ||   |||||||| ||||  | ||||| |||||||  | || |||||||||||||||||||||||    
T  29611108 aaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaa 29611010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14005097 - 14004965
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||||||| || ||||||  |   |||||||| ||||  | ||||| |||||||| | |  || |||||||||||||||||||||    
T  14005097 aaagttgtgttgtggtttggtgatggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctcaaacagttttacaaatcaaat 14004998  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| || || | ||||||| |||||    
T  14004997 actggacaactaaaattgttatgtcctatcctt 14004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41709829 - 41709961
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  41709829 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcatttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 41709928  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  41709929 actggacaactagagttgttctgtcctgtcctt 41709961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 45114183 - 45114239
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||||||||||||||||||||| ||| ||||| | ||||| |||||||||||||||    
T  45114183 ctgaaacagttttacaaatcaaacactgaacaattgaagttgtcatgtcctgtcctt 45114239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 6386628 - 6386726
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| | ||| |  |||| |||||||| |||  |||||||||||||| ||||||||    
T  6386628 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatcttttacctccagtttgtcctatacctgaaacagttttataaatcaaa 6386726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22756464 - 22756366
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||| |  ||||||  ||||| || | |||||||| ||||| | ||||| | |||||| |||| | |||||||||||||||||||||    
T  22756464 aaagttgtgttgtggtataatgagggataaaaatttatgtttttgtcttgtctcttgcctcaaatttgtcctatcccagaaacagttttacaaatcaaa 22756366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 29672376 - 29672278
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||| |||||||    
T  29672376 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacgaatcaaa 29672278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 37618445 - 37618347
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| | |||||| | |  |||||||||||||||||||||||    
T  37618445 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcctttgcctccaatttgtcctgtacctgaaacagttttacaaatcaaa 37618347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 10467116 - 10467248
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| |||||  ||||||  |   |||||||| ||||| | ||||| |||||||| | |  || ||||||||||||||||||||     
T  10467116 aaagttgtgttgtggtttgctgaggaacaaaaatatcagtttttgtcttgtctcttgcctccagtttgtcctgtacctaaaacagttttacaaatcaaac 10467215  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  10467216 actggacaactagagttgttctgtcctgtcctt 10467248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39642935 - 39643051
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   ||||| || ||||  | ||||| |||||||| | |  |||||||||||||| ||||||||     
T  39642935 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttatcttgtcccttgcctccagtttgtcctgtacctgaaacagttttaaaaatcaaac 39643034  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  39643035 actggacaactgaagtt 39643051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 27104011 - 27104109
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||  ||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  27104011 aaagttgtgcagtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 27104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31513636 - 31513538
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||| ||||||||||||||    
T  31513636 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcatctacctgaaacaattttacaaatcaaa 31513538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 32019978 - 32019916
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctttaattt 139  Q
    ||||||||||||||||||||||| ||| |||||||  |||| |  |||||||||||| |||||    
T  32019978 ctgaaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtccttcaattt 32019916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 32303585 - 32303545
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagtt 117  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  32303585 ctgaaacagttttacaaatcaaacactgaacaactaaagtt 32303545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32303638 - 32303606
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  32303638 aaagttgtgttgtggtttggtgagggacaaaaa 32303606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 37474762 - 37474850
Alignment:
Q  11 tgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  37474762 tgtggtttgctgagggacaaaaatataagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 37474850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34351400 - 34351303
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaa 98  Q
    ||||||||||||||||||| |||||| ||| || |||| ||||||||||||||||  |||| |||||||| | || ||||||||||||||||||||||    
T  34351400 aaagttgtgttgtggtttgatgagggacaataatttttgtttttgtcgtgtctatttcctctagtttgtcatgtccctgaaacagttttacaaatcaa 34351303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 49748943 - 49748827
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  49748943 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttgtcatgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 49748844  T
Q  101 actaaacaacttaagtt 117  Q
    |||||||||||| ||||    
T  49748843 actaaacaacttgagtt 49748827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 29584928 - 29585062
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  29584928 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcacttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 29585027  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    |||  ||||||  |||| |  ||||||||||||||    
T  29585028 actggacaactagagttgttctgtcctgtccttta 29585062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39052870 - 39052760
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||| | ||||||  |   |||||||| |||| || ||||| |||||||| | |  |||||||||||||||||||||||     
T  39052870 aaagttgtgttgtggtttggtgagagacaaaaatatgagtttttgtcctgtccattgcctccagtttgtcctgtgcctgaaacagttttacaaatcaaac 39052771  T
Q  101 actaaacaact 111  Q
    |||| ||||||    
T  39052770 actagacaact 39052760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 21373983 - 21374099
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |    ||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  21373983 aaagttgtgttgtggtttggtgagggacaaaaatatgagattttgtcctgtcccttgcctcaagtttgtcctgtacctgaaacagttttacaaatcaaac 21374082  T
Q  101 actaaacaacttaagtt 117  Q
    |||| |||||| |||||    
T  21374083 actagacaactgaagtt 21374099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 24571334 - 24571466
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||     
T  24571334 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaac 24571433  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  24571434 actggacaactagagttgttttgtcctgtcctt 24571466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 34026724 - 34026828
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatacta 104  Q
    |||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| |||  ||||||||||||||||||||||| |||     
T  34026724 ttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctatacctgaaacagttttacaaatcaaacactg 34026823  T
Q  105 aacaa 109  Q
    |||||    
T  34026824 aacaa 34026828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 50386488 - 50386356
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||||||||| |||||  ||||||  |  ||||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  50386488 aaagttgtgctgtggtttgttgaggcacaaaaatatcaatttttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 50386389  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||| ||||||  |||| |  ||||||||||||    
T  50386388 actagacaactggagttgttctgtcctgtcctt 50386356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3864707 - 3864609
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||| ||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  3864707 aaagttgtgttgtggtttggcgagggacaaaaatatgagtttttgtcctgtcctttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 3864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 12349203 - 12349071
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||| | ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  12349203 aaagttgtgctgtggtttggtgagagacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 12349104  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| | |||||||||||||    
T  12349103 actggacaactggagttgttatgtcctgtcctt 12349071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 19906815 - 19906931
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| |||||| ||   |||||||| ||||  | ||||| |||||||  | || |||||||| ||||||||||||||     
T  19906815 aaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaac 19906914  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  19906915 actggacaactgaagtt 19906931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33364810 - 33364694
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||||||||| |||||||||||||  |   |||||||| ||||| | ||||| |||||||| | |  ||||||||||||||||||| |||     
T  33364810 aaagttgtgatgtggtttgctgaggggcaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaataaaac 33364711  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  33364710 actggacaactgaagtt 33364694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21221392 - 21221259
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| || ||||| | |  ||||||||||||||||||||||||    
T  21221392 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccag-ttgtcctgtacctgaaacagttttacaaatcaaat 21221294  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    | |  ||||||  |||| |  ||||||||||||||    
T  21221293 attggacaactagagttgttctgtcctgtccttta 21221259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 24721538 - 24721648
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| |||||  | |||| |||  |||||||| ||||  |  |||| |||||||  | || |||||||||||||||||||||||     
T  24721538 aaagttgtgttgtggtttgttgaggtaccaaaattttagtttttgtcctgtcctttacctccagtttgttctgtccctgaaacagttttacaaatcaaac 24721637  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  24721638 actgaacaact 24721648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25860453 - 25860355
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  25860453 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 25860355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28675843 - 28675941
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| | ||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  28675843 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 28675941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31883054 - 31882956
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||| |||||  ||||||  |   |||||||||||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  31883054 aaagttgtgctgtggtttgctgaggcacaaaaatatcagtttttgtcgtgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 31882956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 41683079 - 41682953
Alignment:
Q  7 gtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatactaaa 106  Q
    ||||||||||||| |||||| |||||   |   |||||||| ||||| | ||||| |||||||| | |  ||||||||||||||||||||||| |||  |    
T  41683079 gtgttgtggtttgctgagggacaaaagtatcagtttttgtcttgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactgga 41682980  T
Q  107 caacttaagttatcatgtcctgtcctt 133  Q
    ||||| ||||| |  ||||||||||||    
T  41682979 caactgaagttgttttgtcctgtcctt 41682953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 51925240 - 51925146
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaat 95  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||    
T  51925240 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcctttgcctccagtttgtcatgtacctgaaacagttttacaaat 51925146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25927359 - 25927261
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||| |||||| |||| ||||||  |   |||||||| ||||  | ||||| |||||||| | | | ||||||||||||||||||||||    
T  25927359 aaagttgtgttgtgttttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtatttgaaacagttttacaaatcaaa 25927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38213407 - 38213505
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||| ||||| | ||||||  |   |||||||| ||||| | ||||| || ||||| |||  |||||||| ||||||||||||||    
T  38213407 aaagttgtgttgtggtttcgtgagtgacaaaaatatgagtttttgtcctgtctcttgcctccagattgtcctatacctgaaacaattttacaaatcaaa 38213505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 51259812 - 51259714
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||  ||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  51259812 aaagttgtgccgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 51259714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 51296638 - 51296728
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaat 95  Q
    |||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||    
T  51296638 ttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaat 51296728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4689742 - 4689626
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  | | |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||     
T  4689742 aaagttgtgttgtggtttggtgagggacaaaaatatgtgtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaac 4689643  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  4689642 actggacaactgaagtt 4689626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39918559 - 39918691
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| | ||||||||||||||||||||||||     
T  39918559 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtatctgaaacagttttacaaatcaaac 39918658  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| || ||||||||||||    
T  39918659 actggacaactagagttgtcttgtcctgtcctt 39918691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2351732 - 2351864
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| |||  || ||||||||||||||||||||     
T  2351732 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcacttgcctccagtttgtcctataccttaaacagttttacaaatcaaac 2351831  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| |||||||  |||| || ||||||||||||    
T  2351832 actgaacaactagagttgtcctgtcctgtcctt 2351864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 8136889 - 8136987
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | | ||||||||||||||||||| ||||    
T  8136889 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcctgtatctgaaacagttttacaaaacaaa 8136987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31770635 - 31770501
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||||||||||  |||||  |   |||||||| ||||  | ||||| |||||||||| |   ||||||||||||||||||||||     
T  31770635 aaagttgtgttgtggtttggtgagggataaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacatgaaacagttttacaaatcaaac 31770536  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    ||| |||||||  |||| | ||||| |||||||||    
T  31770535 actgaacaactagagttgttatgtcatgtccttta 31770501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 32528767 - 32528899
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | | ||| |||||||| | |  |||||||||||||||||||||||     
T  32528767 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaac 32528866  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| |||||||  |||| || |||| |||||||    
T  32528867 actgaacaactagagttgtcctgtcatgtcctt 32528899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 6284342 - 6284224
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||| |   |||||||| ||||    ||||| |||||||| | |  ||||| |||||||||||||||||     
T  6284342 aaagttgtgttgtggtttggtgagggacaaaaaaataagtttttgtcctgtcccatgcctccagtttgtcctgtacctgaagcagttttacaaatcaaac 6284243  T
Q  101 actaaacaacttaagttat 119  Q
    |||  |||||| |||||||    
T  6284242 actggacaactaaagttat 6284224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41459641 - 41459750
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| | |||||||||||||| |||||| | | | |||| || ||||  | ||||| |||||||| | |  ||||||||||||||||||||||||    
T  41459641 aaagttgtgctctggtttggtgagggacaaaaa-tatgagttttttcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaat 41459739  T
Q  101 actaaacaact 111  Q
    |||||||||||    
T  41459740 actaaacaact 41459750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41790506 - 41790409
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||| ||| ||||| |||||||| | |  |||||||||||||||||||||||    
T  41790506 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtttattgcctccagtttgtcctgt-actgaaacagttttacaaatcaaa 41790409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 11963393 - 11963525
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  11963393 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 11963492  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  11963493 actggacaactagagttgttctgtcctgtcctt 11963525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34794939 - 34795039
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||||||||||||    
T  34794939 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaat 34795038  T
Q  101 a 101  Q
    |    
T  34795039 a 34795039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40489389 - 40489521
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||| ||||||||||| ||||||  |   ||||||||  |||  | ||||| |||||||||| |  |||||||||||||||||||||||     
T  40489389 aaagttgtgctgtgatttggtgagggacaaaaatatgagtttttgtcccgtcccttgcctccagtttgtcttctacctgaaacagttttacaaatcaaac 40489488  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| ||||| |  ||||||  ||||||||||||    
T  40489489 actgaacaattagagttattctgtcctgtcctt 40489521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7523224 - 7523322
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  7523224 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 7523322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21739205 - 21739107
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  21739205 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 21739107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28090564 - 28090466
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||| |||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||| ||| |  |||||||||||||||||||||||    
T  28090564 aaagttgtgttgtagtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgccttgtacctgaaacagttttacaaatcaaa 28090466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 553449 - 553557
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||| | ||||||  |   |||||||| ||||| | ||||| |||||||| | |   ||||||||||||| ||||||||     
T  553449 aaagttgtgttgtggtttggtgagagacaaaaatatgagtttttgtcttgtctcttgcctccagtttgtcctgtacttgaaacagttttataaatcaaac 553548  T
Q  101 actaaacaa 109  Q
    |||| ||||    
T  553549 actagacaa 553557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 31880118 - 31880010
Alignment:
Q  3 agttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatac 102  Q
    ||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||| ||||||| ||    
T  31880118 agttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcacttgcctccagtttgtcctgtacctgaaacagttttactaatcaaacac 31880019  T
Q  103 taaacaact 111  Q
    | |||||||    
T  31880018 tgaacaact 31880010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 7770323 - 7770225
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||||||| || ||||||  | | |||||||| ||||  | ||||| |||||||| | |  |||||||| ||||||||||||||    
T  7770323 aaagttgtgctgtggtttggtgaaggacaaaaatatgtgtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacaattttacaaatcaaa 7770225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17031209 - 17031307
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||| |||  ||||||||||||| || | |||||||| ||||  | ||||| | |||||  | || |||||||||||||||||||||||    
T  17031209 aaagttgtgctgtgatttaatgaggggcaaaaatttatgtttttgtcctgtcctttgcctccaatttgtactgtccctgaaacagttttacaaatcaaa 17031307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18470472 - 18470374
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||||| |||| |||||| ||   |||||||| ||||  | ||||  |||||||  | || |||||||||||||||||||||||    
T  18470472 aaagttgtgctgtggtttggtaagggacaaaaatttcagtttttgtcttgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaa 18470374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35701329 - 35701427
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||| ||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  | |||||||||||||||||||||    
T  35701329 aaagttatgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtaccagaaacagttttacaaatcaaa 35701427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5571688 - 5571619
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtc 70  Q
    |||||||||||||||||||||||||| ||||||  |  ||||||||| ||||  | ||||| ||||||||    
T  5571688 aaagttgtgttgtggtttggtgagggacaaaaatatgaatttttgtcctgtcccttgcctccagtttgtc 5571619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5673191 - 5673223
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  5673191 aaagttgtgttgtggtttggtgagggacaaaaa 5673223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27839117 - 27839020
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttat-ttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||| || |||||||||||||| ||||||  ||||| |||| || |||| || ||||  |||||||| | |  |||||||||||||||||||||||    
T  27839117 aaagttgttttatggtttggtgagggacaaaaa--tttatgttttatcctgtccattgccttcagtttgtcatgtacctgaaacagttttacaaatcaaa 27839020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 1687 - 1589
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| |||||| ||   |||||||| ||||  | ||||| |||||||| ||||  ||||||||||||||||||||||    
T  1687 aaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagtttgtcctatccttgaaacagttttacaaatcaaa 1589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21784927 - 21785037
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  21784927 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcatgtgcctgaaacagttttacaaatcaaac 21785026  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  21785027 actgaacaact 21785037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1870191 - 1870301
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| ||||| |||| |  |||||||||||||||||||||||     
T  1870191 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttatcttgtacctgaaacagttttacaaatcaaac 1870290  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  1870291 actgaacaact 1870301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 10932596 - 10932464
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||| |||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  10932596 aaagttgtgttgtagtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 10932497  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| |||||||  |||| |  ||||||||||||    
T  10932496 actgaacaactagagttgttctgtcctgtcctt 10932464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41211239 - 41211107
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||     
T  41211239 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcttgtacctgaaacagttttacaaatcaaac 41211140  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||   |||||| |||| |  ||||||||||||    
T  41211139 actgggcaacttgagttgttctgtcctgtcctt 41211107  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 329526 - 329624
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| |||||| ||   |||||||| ||||  | ||||| |||||||  | || |||||||||||||||||||||||    
T  329526 aaagttgtgatgtggtttggtgagggacaaaaatttcagtttttgtcttgtcctttgcctccagtttgttctgtccctgaaacagttttacaaatcaaa 329624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38301398 - 38301496
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||||||| |||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  38301398 aaagttgtgttgtggtttgctgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 38301496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 44748751 - 44748885
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||| ||||||||||||||||| |||||| ||   |||||||  ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  44748751 aaagttgtattgtggtttggtgagggacaaaaatttgagtttttgttctgtcccttgcctctagtttgtcatgtacctgaaacagttttacaaatcaaac 44748850  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    |||  ||||||  |||| |  ||||||||||||||    
T  44748851 actggacaactagagttgttttgtcctgtccttta 44748885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18386581 - 18386678
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| | |||||| | | ||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  18386581 aaagttgtgctgtggtttggtgagggac-aaaaatatgagttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaa 18386678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36769608 - 36769510
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  36769608 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaa 36769510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43158725 - 43158627
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||||||||| |||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  43158725 aaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 43158627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47316737 - 47316639
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||| ||||||||||||||    
T  47316737 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacaattttacaaatcaaa 47316639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47953246 - 47953344
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  47953246 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 47953344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 43368257 - 43368389
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||||||||| |||||  ||||||  |   ||||||||  |||| | ||||| |||||||| |||  |||||||||||||||||||||||     
T  43368257 aaagttgtgctgtggtttgctgaggcacaaaaatatcagtttttgtcccgtctcttgcctccagtttgtcctatacctgaaacagttttacaaatcaaac 43368356  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  43368357 actggacaactggagttgttctgtcctgtcctt 43368389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11250673 - 11250767
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaat 95  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||| ||||||||||    
T  11250673 aaagttgtgttgtggtttggtgagggacaaaaatatgattttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacaattttacaaat 11250767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11321924 - 11321826
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||| |||||||||||||||||    
T  11321924 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtccgttgcctccagtttgtcctgtacctgaatcagttttacaaatcaaa 11321826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34519564 - 34519698
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||| ||||| |||||| |    |||||||| ||||  | ||||| || ||||| | || ||||||| ||||||||| || ||     
T  34519564 aaagttgtgttgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagcttgtcatgtccctgaaactgttttacaattcgaac 34519663  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    |||  |||||| ||||| |  ||||||||||||||    
T  34519664 actggacaactgaagttgttctgtcctgtccttta 34519698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 40753211 - 40753309
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||| ||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  40753211 aaagttgtgctgtgatttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 40753309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30849285 - 30849188
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaa 98  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||| | |||||||| | |  || |||||||||||||||||||    
T  30849285 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgccaccagtttgtcctgtacctaaaacagttttacaaatcaa 30849188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 16027902 - 16027842
Alignment:
Q  65 tttgtcttatctctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtc 125  Q
    |||||||| ||| ||||||| |||||||||||||| |||| ||||||  ||||||| ||||    
T  16027902 tttgtcttgtctttgaaacaattttacaaatcaaacactatacaactagagttatcttgtc 16027842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23349330 - 23349298
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  23349330 aaagttgtgttgtggtttggtgagggacaaaaa 23349298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43189281 - 43189249
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  43189281 aaagttgtgttgtggtttggtgagggacaaaaa 43189249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18597235 - 18597125
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| ||    ||||||| ||||  | |||||  ||||||| |||| |||||||||||||||||||||||     
T  18597235 aaagttgtgttgtggtttggtgagggacaaaaatttcagattttgtcatgtcccttgcctccggtttgtcatatccctgaaacagttttacaaatcaaac 18597136  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  18597135 actgaacaact 18597125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3259735 - 3259833
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||    
T  3259735 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 3259833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10324188 - 10324078
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||||||| |||     
T  10324188 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaattaaac 10324089  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  10324088 actgaacaact 10324078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 14925457 - 14925401
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||||||||||||||||||||| |||  |||||| ||||| |||||||||||||||    
T  14925457 ctgaaacagttttacaaatcaaacactggacaactgaagttgtcatgtcctgtcctt 14925401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 167000 - 166902
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||  ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  167000 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgttatgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaa 166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11675451 - 11675341
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||| |||||||||||| | ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  11675451 aaagttgtgttatggtttggtgagagacaaaaatatcagtttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 11675352  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  11675351 actgaacaact 11675341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15277014 - 15276916
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  15277014 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 15276916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24203414 - 24203512
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  || ||||||||||||||||||||    
T  24203414 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtttgtcctgtacctaaaacagttttacaaatcaaa 24203512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24242716 - 24242814
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   ||||||| |||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  24242716 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgttgtgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 24242814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 9200453 - 9200332
Alignment:
Q  13 tggtttggtgaggggcaaaaaattttatttttgtcgtgtctatg-gcctcgagtttgtcttatctctgaaacagttttacaaatcaaatactaaacaact 111  Q
    ||||||||||||||  || || |||| |||||||| ||||| |  ||||| |||||||| | ||| | |||||||||||||||||||| | |  ||||||    
T  9200453 tggtttggtgagggagaagaatttttgtttttgtcttgtctcttagcctctagtttgtcatgtctttaaaacagttttacaaatcaaacattgtacaact 9200354  T
Q  112 taagttatcatgtcctgtcctt 133  Q
    | |||| ||||||| |||||||    
T  9200353 tgagttgtcatgtcttgtcctt 9200332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3379762 - 3379878
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| | |||||||||||| | ||||||  |   |||||||| ||||| | ||||| |||||||| | | ||||||||||||||| ||||||||     
T  3379762 aaagttgtgctatggtttggtgagcgacaaaaatatcagtttttgtcttgtctcttgcctccagtttgtcctgtatctgaaacagttttataaatcaaac 3379861  T
Q  101 actaaacaacttaagtt 117  Q
    |||  |||||| |||||    
T  3379862 actggacaactaaagtt 3379878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8177958 - 8177861
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||||||||| |||| | |||||| | |||||| || ||||  | ||||| ||||||| || |  |||||||||||||| ||||||||    
T  8177958 aaagttgtgttgtggtttggtaagggac-aaaaatatcatttttatcctgtcccttgcctccagtttgttttgtacctgaaacagttttataaatcaaa 8177861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11279180 - 11279278
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||    ||||| |||||||| | |   ||||||||||||||||||||||    
T  11279180 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccatgcctccagtttgtcctgtacttgaaacagttttacaaatcaaa 11279278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 29036379 - 29036349
Alignment:
Q  184 tagttagtactccctccgtccctatatataa 214  Q
    |||||||||||||||||||||||||||||||    
T  29036379 tagttagtactccctccgtccctatatataa 29036349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32132457 - 32132359
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||||| |||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  || ||||||||||||||||||||    
T  32132457 aaagttgtgttgtggattggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctaaaacagttttacaaatcaaa 32132359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 14925215 - 14925162
Alignment:
Q  80 aaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||| |||||||||||||| |||  |||||| ||||| |||||||||||||||    
T  14925215 aaacaattttacaaatcaaacactggacaactgaagttgtcatgtcctgtcctt 14925162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 5650742 - 5650679
Alignment:
Q  40 tttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatacta 104  Q
    |||||||||| ||||| ||||  |||||||||| || |||||| |||| ||||||||||||||||    
T  5650742 tttttgtcgtatctattgccttcagtttgtcttgtc-ctgaaatagttctacaaatcaaatacta 5650679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 11613792 - 11613736
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||||||||||||||||||||| |||  |||||| ||||| |  ||||||||||||    
T  11613792 ctgaaacagttttacaaatcaaacactggacaactaaagttgttctgtcctgtcctt 11613736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14808078 - 14808046
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  14808078 aaagttgtgttgtggtttggtgagggacaaaaa 14808046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31870177 - 31870145
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  31870177 aaagttgtgttgtggtttggtgagggacaaaaa 31870145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34684060 - 34684028
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  34684060 aaagttgtgttgtggtttggtgagggacaaaaa 34684028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41967962 - 41967830
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||||| |||| ||||||  |   |||||||| ||||| | ||||| |||||||| | |  ||||||||||||||||||||||||    
T  41967962 aaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcttgtctcttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaat 41967863  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  41967862 actggacaactagagttgttctgtcctgtcctt 41967830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 42512883 - 42512749
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| |||||  ||||||  |   |||||||| ||||| | ||||| |||||||| | |  |||||||||||||||||||||||     
T  42512883 aaagttgtgttgtggtttgctgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 42512784  T
Q  101 actaaacaacttaagttatcatgtcctgtccttta 135  Q
    |||  |||||| ||||| |  ||||||||||||||    
T  42512783 actggacaactgaagttgttctgtcctgtccttta 42512749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7837194 - 7837310
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||| |||||| | || |||||||||  ||||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  7837194 aaagttgtgatgtgatttggtaatggacaaaaaattcaatttttgtcatgtcccttgcctctagtttgtcatgttcctgaaacagttttacaaatcaaac 7837293  T
Q  101 actaaacaacttaagtt 117  Q
    ||| ||||||| |||||    
T  7837294 actgaacaactgaagtt 7837310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31004193 - 31004325
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||    ||||| |||||||| | |  |||||||||||||||||||||||     
T  31004193 aaagttgtgttgtggtttggtgagggacaaaaacatcagtttttgtcctgtcccgtgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 31004292  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  |||||| ||||| |  ||||||||||||    
T  31004293 actggacaactgaagttgttctgtcctgtcctt 31004325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 51264556 - 51264688
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  51264556 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 51264655  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  ||||||  |||| |||||||    
T  51264656 actggacaactagagttattctgtcttgtcctt 51264688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6029414 - 6029283
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| ||   |||||||| ||||  | ||||  |||||||  | || |||||||||||||||||||||||     
T  6029414 aaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatcaaac 6029315  T
Q  101 actaaacaacttaagttatcatgtcctgtcct 132  Q
    |||  ||||||  |||| |  |||||||||||    
T  6029314 actggacaactggagttgttctgtcctgtcct 6029283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5109789 - 5109899
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| | |||||||| |  |||||||||||||||||||||||     
T  5109789 aaagttgtgatgtggtttggtgagggacaaaaacatgagtttttgtcctgtcccttgcctccaatttgtcttgtacctgaaacagttttacaaatcaaac 5109888  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  5109889 actgaacaact 5109899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16386915 - 16387025
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  16386915 aaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaac 16387014  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  16387015 actgaacaact 16387025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16437423 - 16437521
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  16437423 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcctttgcctctagtttgtcctgtagctgaaacagttttacaaatcaaa 16437521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17888009 - 17888107
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||| ||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  17888009 aaagttgtgttgtggtttggcgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 17888107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 7183979 - 7184108
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||||| |||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||| ||||||     
T  7183979 aaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacatatcaaac 7184078  T
Q  101 actaaacaacttaagttatcatgtcctgtc 130  Q
    |||  |||||| |||||||  |||||||||    
T  7184079 actggacaactaaagttattctgtcctgtc 7184108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 844837 - 844705
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  844837 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaac 844738  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  844737 actggacaactagagttgttctgtcctgtcctt 844705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 1351548 - 1351416
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| |||   | ||||| |||||||| | |  |||||||||||||||||||||||     
T  1351548 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgttccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 1351449  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  1351448 actggacaactagagttgttctgtcctgtcctt 1351416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 6711155 - 6711027
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatacta 104  Q
    |||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||||||||||| |||     
T  6711155 ttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaacactg 6711056  T
Q  105 aacaacttaagttatcatgtcctgtcctt 133  Q
     ||||||  |||| |  ||||||||||||    
T  6711055 gacaactagagttgttctgtcctgtcctt 6711027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 11772745 - 11772613
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| || ||| ||| |  |||||||||||||||||||||||     
T  11772745 aaagttgtgctgtggtttggtgagggacaaaaatatcagtttttgtcttgtcctttgcctccagattgccttgtacctgaaacagttttacaaatcaaac 11772646  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| | |||||||||||||    
T  11772645 actggacaactggagttgttatgtcctgtcctt 11772613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16451188 - 16451320
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||| | ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  16451188 aaagttgtgttgtggtttggtgagagacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 16451287  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    | |  ||||||  |||| | |||||||||||||    
T  16451288 attggacaactagagttgttatgtcctgtcctt 16451320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 16704789 - 16704885
Alignment:
Q  3 agttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||| ||||||||||| |||| ||||||  | | |||||||||||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  16704789 agttgtgatgtggtttggtaagggacaaaaatatatgtttttgtcgtgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaa 16704885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 32270414 - 32270546
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  32270414 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctctacctgaaacagttttacaaatcaaac 32270513  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  32270514 actggacaactagagttgttctgtcctgtcctt 32270546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39281955 - 39282087
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||  |||||||||||||||| ||||||  |   |||||||| ||||  | || || |||||||| | |  || ||||||||||||||||||||     
T  39281955 aaagttgtactgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcatctagtttgtcctgtaccttaaacagttttacaaatcaaac 39282054  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||| ||||||| |||||||| |||| |||||||    
T  39282055 actgaacaactgaagttatcttgtcatgtcctt 39282087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 24339752 - 24339617
Alignment:
Q  1 aaagttgtgttgtggttt-ggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||| |||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||| |||||||||||    
T  24339752 aaagttgtgttgtggttttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttatacaaatcaaa 24339653  T
Q  100 tactaaacaacttaagttatcatgtcctgtccttta 135  Q
     ||| |||||||  |||| |  ||||||||||||||    
T  24339652 cactgaacaactagagttgttctgtcctgtccttta 24339617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3560263 - 3560137
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||| || |||| |||||  ||  ||||||||  |||| || || |  |||||||| ||||||| | |||| |||||||||||||     
T  3560263 aaagttgtgttgtggtttagtaagggacaaaactttaaatttttgttttgtccattgctttcagtttgtcctatctctaagacagatttacaaatcaaac 3560164  T
Q  101 actaaacaacttaagttatcatgtcct 127  Q
    | || | |||||||||| |||||||||    
T  3560163 attatataacttaagttgtcatgtcct 3560137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6144099 - 6144001
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||  ||||| |||||| |    |||||||| ||||  | ||||| |||||||| | |||||||||| |||||||||||||||    
T  6144099 aaagttgtgttgtggtttgccgagggacaaaaattgcagtttttgtcctgtcccttgcctccagtttgtcatgtctctgaaactgttttacaaatcaaa 6144001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 28340416 - 28340318
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||| |||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  28340416 aaagttgtgctgtggtttgatgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 28340318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 41972972 - 41973070
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||  |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | | ||||||||||||||||||||||||    
T  41972972 aaagttgtagtgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtatctgaaacagttttacaaatcaaa 41973070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 45490988 - 45490890
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |   ||||||||||||||||||||||    
T  45490988 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtcccttgcctccagtttgtcctgtacttgaaacagttttacaaatcaaa 45490890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 13994188 - 13994055
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| |||||| ||   ||||||||  ||   | ||||| | |||||| | ||  ||||||||||||||||||||||     
T  13994188 aaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtccagttccttgcctccaatttgtcatgtccatgaaacagttttacaaatcaaac 13994089  T
Q  101 actaaacaacttaagttatcatgtcctgtccttt 134  Q
    |||  |||||| ||||| |  |||||| ||||||    
T  13994088 actggacaactgaagttgttctgtcctatccttt 13994055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 26118328 - 26118196
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||| ||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  26118328 aaagttgtgctgtgatttggtgagggacaaaaatatgagtttttgtcctgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 26118229  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| | ||||| |||||||    
T  26118228 actggacaactagagttgttatgtcatgtcctt 26118196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7837435 - 7837553
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||| |||| | | || |||||||||  ||||||||| ||||    ||||| |||||||| | |  |||||||||||||| ||||||||     
T  7837435 aaagttgtgatgtgatttgataatggacaaaaaattcaatttttgtcatgtcccctgcctctagtttgtcatgttcctgaaacagttttataaatcaaac 7837534  T
Q  101 actaaacaacttaagttat 119  Q
    ||| ||||||| |||||||    
T  7837535 actgaacaactgaagttat 7837553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 30105793 - 30105695
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||| || |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  30105793 aaagttatgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctttacctgaaacagttttacaaatcaaa 30105695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 39792869 - 39792999
Alignment:
Q  2 aagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaata 101  Q
    |||||||||||||||||||||| || ||| || ||  ||||||||| | ||| | | ||| | ||| |||| || || |||||||||| ||||||||| |    
T  39792869 aagttgtgttgtggtttggtgaaggacaagaatttcaatttttgtcatatcttttgtctccaatttatcttgtccctaaaacagttttgcaaatcaaaca 39792968  T
Q  102 ctaaacaacttaagttatcatgtcctgtcct 132  Q
    ||  ||||| |||||| |||| || ||||||    
T  39792969 ctgtacaacctaagttgtcatttcatgtcct 39792999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1601234 - 1601348
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||  | ||  | ||||| |||||||| | |  ||||||| |||||||||||||||     
T  1601234 aaagttgtgttgtggtttggtgagggacaaaaa--tgagtttttgttctatcccttgcctccagtttgtcctgtacctgaaaccgttttacaaatcaaac 1601331  T
Q  101 actaaacaacttaagtt 117  Q
    ||| ||||||| |||||    
T  1601332 actgaacaactaaagtt 1601348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25539916 - 25539948
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  25539916 aaagttgtgttgtggtttggtgagggacaaaaa 25539948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42705351 - 42705319
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  42705351 aaagttgtgttgtggtttggtgagggacaaaaa 42705319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 49303405 - 49303369
Alignment:
Q  63 agtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||||||  |||||||||||||||||||||||    
T  49303405 agtttgtcttatacctgaaacagttttacaaatcaaa 49303369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 50304712 - 50304844
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||  ||||| ||||||  |   |||||||| ||| | | ||||| |||||||| | |  |||||||||||||||||||||||     
T  50304712 aaagttgtgctgtggtttgcagagggacaaaaatatcagtttttgtcttgtttcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 50304811  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  50304812 actggacaactggagttgttctgtcctgtcctt 50304844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 38623342 - 38623244
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| |||||| ||   |||||||| | || || ||||| |||||||| | || |||||||||||||||||||||||    
T  38623342 aaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcttttccattgcctcaagtttgtcctgtccctgaaacagttttacaaatcaaa 38623244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 9732968 - 9732836
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  9732968 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 9732869  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  9732868 actggacaactagagttgttctgtcctgtcctt 9732836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 35114841 - 35114969
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatacta 104  Q
    |||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||||||||||||||||||| ||||    
T  35114841 ttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcctgtacctgaaacagttttacaaatcaaacacta 35114940  T
Q  105 aacaacttaagttatcatgtcctgtcctt 133  Q
     ||||||  |||| || |||| |||||||    
T  35114941 gacaactagagttgtcctgtcttgtcctt 35114969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 37308707 - 37308839
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  37308707 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 37308806  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  37308807 actggacaactagagttgttctgtcctgtcctt 37308839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 40832507 - 40832391
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||| || |||||||||||||     
T  40832507 aaagttgtgttgtggtttggtgagggacaaaaatatccgtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaatagctttacaaatcaaac 40832408  T
Q  101 actaaacaacttaagtt 117  Q
    |||  ||||||||||||    
T  40832407 actggacaacttaagtt 40832391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32766542 - 32766444
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  32766542 aaagttgtgttgtggtttggtgagggacaaaaatatcagtttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaa 32766444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 44284681 - 44284791
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||| ||||||| ||||||  |   |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||     
T  44284681 aaagttgtgctgtggtttagtgagggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaac 44284780  T
Q  101 actaaacaact 111  Q
    ||| |||||||    
T  44284781 actgaacaact 44284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6896220 - 6896349
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||| |||||||||||| |||||| ||   ||||| || ||||  | ||||| ||||||| || || |||||||||||||||||||||||     
T  6896220 aaagttgtgctgttgtttggtgagggacaaaaatttcagtttttatcctgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaac 6896319  T
Q  101 actaaacaacttaagttatcatgtcctgtc 130  Q
    |||  |||||| ||||| |  |||||||||    
T  6896320 actggacaactgaagttgttctgtcctgtc 6896349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 33889295 - 33889427
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaatttta-tttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||||||||||  ||||||| | | |||||||| ||||  | ||||| |||||||| | | ||||||||| ||||||||||||||    
T  33889295 aaagttgtgatgtggtttggtgaggga-aaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtatctgaaacaattttacaaatcaaa 33889393  T
Q  100 tactaaacaacttaagttatcatgtcctgtcctt 133  Q
     |||| ||||||  |||| |  ||||||||||||    
T  33889394 cactagacaactagagttgttctgtcctgtcctt 33889427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7761611 - 7761479
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  7761611 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtttgtcatgtacctgaaacagttttacaaatcaaac 7761512  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  7761511 actggacaactagagttgttctgtcctgtcctt 7761479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34338862 - 34338994
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  34338862 aaagttgtgctgtggtttggtgagggtcaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 34338961  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  34338962 actggacaactagagttgttctgtcctgtcctt 34338994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7258949 - 7259052
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  7258949 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 7259048  T
Q  101 acta 104  Q
    ||||    
T  7259049 acta 7259052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 15303278 - 15303175
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| ||| ||||| | | || |||||| || | |||||||| ||| | | ||||| |||||||| | |||||||| ||||||||||||||||||    
T  15303278 aaagttgtgatgtagtttgataaaggacaaaaatttatgtttttgtcatgtgtcttgcctctagtttgtcctgtctctgaagcagttttacaaatcaaat 15303179  T
Q  101 acta 104  Q
    ||||    
T  15303178 acta 15303175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16104326 - 16104424
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| | |||||| | | ||||||||||||||||||||||||    
T  16104326 aaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccaatttgtcgtgtatctgaaacagttttacaaatcaaa 16104424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26981747 - 26981649
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||| ||||||||||||||||||| ||||||  |   |||||||| ||||  | |||||  ||||||||| | |||| |||||||||||||||||||    
T  26981747 aaagttttgttgtggtttggtgagggacaaaaatatgagtttttgtcatgtcatttgcctcccgtttgtcttgtatctggaacagttttacaaatcaaa 26981649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 33366662 - 33366760
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||  ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  33366662 aaagttgtgttgtggtttggtgaggaacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 33366760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 41366144 - 41366050
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||| |||||| ||   |||||||| | ||| | ||||| |||||||| | || ||||||| |||| ||||||||||    
T  41366144 ttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctatctcttgcctccagtttgtcatgtccctgaaactgtttcacaaatcaaa 41366050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 42706411 - 42706509
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| | ||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  42706411 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcttatcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 42706509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 18685888 - 18686020
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||| |||||||||||||| | ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||     
T  18685888 aaagttgtgctgtggtttggtgagagacaaaaatatgagtttttgtcttgtcctttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaac 18685987  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  ||||||  |||| |||||||    
T  18685988 actggacaactagagttattctgtcatgtcctt 18686020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42365629 - 42365761
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||||||||||||| ||| || ||||||  |   |||||||| ||||  | ||||| |||||||| | |  ||||||| |||||||||||||||     
T  42365629 aaagttgtgttgtggtttgatgaaggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcatgtacctgaaacggttttacaaatcaaac 42365728  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||| ||||||  |||| | ||||| |||||||    
T  42365729 actagacaactagagttgttatgtcatgtcctt 42365761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 4641623 - 4641682
Alignment:
Q  58 cctcgagtttgtcttatctctgaaacagttttacaaatcaaatactaaacaacttaagtt 117  Q
    |||| |||||||||| |  ||||||||||||||||||||||| ||| ||||||| |||||    
T  4641623 cctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactaaagtt 4641682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 5278868 - 5278774
Alignment:
Q  5 ttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||| |||||||||||||||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  5278868 ttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgtcatgtacctgaaacagttttacaaatcaaa 5278774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 9717329 - 9717385
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||||||||||||||||||||| ||| |||||||  |||| |  ||||||||||||    
T  9717329 ctgaaacagttttacaaatcaaacactgaacaactagagttgttctgtcctgtcctt 9717385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27462840 - 27462808
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  27462840 aaagttgtgttgtggtttggtgagggacaaaaa 27462808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 37003853 - 37003797
Alignment:
Q  77 ctgaaacagttttacaaatcaaatactaaacaacttaagttatcatgtcctgtcctt 133  Q
    ||||||||| ||||||||||||| |||  ||||||| |||| | |||||||||||||    
T  37003853 ctgaaacagatttacaaatcaaacactggacaacttgagttgttatgtcctgtcctt 37003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37003906 - 37003874
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  37003906 aaagttgtgttgtggtttggtgagggacaaaaa 37003874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 38993109 - 38992977
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    |||||||||||||||||||  ||||  |||||| | |  |||||||| ||||  | ||||| |||||||| | |  ||||||| |||||||||||||||     
T  38993109 aaagttgtgttgtggtttgacgaggaacaaaaattgtagtttttgtcctgtcccttgcctccagtttgtcctcttcctgaaactgttttacaaatcaaac 38993010  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  ||||||  |||| |||||||    
T  38993009 actggacaactggagttattctgtcatgtcctt 38992977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5484 - 5367
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa-attttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| |||||||||||||||| |||||| || |  |||||||| ||||  | ||||| |||||||||| |  |||||||||||||||||||||||    
T  5484 aaagttgtgatgtggtttggtgagggacaaaaatatgtgttttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaa 5385  T
Q  100 tactaaacaacttaagtt 117  Q
     |||  |||||| |||||    
T  5384 cactggacaactgaagtt 5367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 18098 - 18000
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| ||||||  |   |||||||| ||||  | ||||| | |||||| | |  |||||||||||||||||||||||    
T  18098 aaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccaatttgtcatgtacctgaaacagttttacaaatcaaa 18000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12580 - 12548
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  12580 aaagttgtgttgtggtttggtgagggacaaaaa 12548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 42994 - 42896
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||||||| || ||| ||   |||||||  ||||  | ||||| |||||||  | || |||||||||||||||||||||||    
T  42994 aaagttgtgttgtggtttggtgagggacacaaatttcagtttttgttctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaa 42896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 15224 - 15322
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    |||||||||||||||||||||| ||| ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  15224 aaagttgtgttgtggtttggtgggggacaaaaatatgagtttttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaa 15322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 2538 - 2402
Alignment:
Q  3 agttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaatac 102  Q
    ||||||||||||||||||| |||| |||| |  |   |||||||| ||||  |  |||| | |||||||| |  ||||||||||||||||||||||| ||    
T  2538 agttgtgttgtggtttggttagggacaaagatatgagtttttgtcctgtccctttcctccaatttgtcttgtacctgaaacagttttacaaatcaaacac 2439  T
Q  103 taaacaacttaagttatcatgtcctgtcctttaattt 139  Q
    | |||||||  |||| | ||||| ||||||| |||||    
T  2438 tgaacaactagagttgttatgtcttgtccttcaattt 2402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 23627 - 23725
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaa 99  Q
    ||||||||| ||||||||||||| || ||||||  |   |||||||| ||||  | ||||| |||||||| | |  |||||||||||||||||||||||    
T  23627 aaagttgtgctgtggtttggtgaaggacaaaaatatgagtttttgtcatgtcccttgcctcaagtttgtcctgtacctgaaacagttttacaaatcaaa 23725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4623 - 4591
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  4623 aaagttgtgttgtggtttggtgagggacaaaaa 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15425 - 15393
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaa 33  Q
    |||||||||||||||||||||||||| ||||||    
T  15425 aaagttgtgttgtggtttggtgagggacaaaaa 15393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 13731 - 13599
Alignment:
Q  1 aaagttgtgttgtggtttggtgaggggcaaaaaattttatttttgtcgtgtctatggcctcgagtttgtcttatctctgaaacagttttacaaatcaaat 100  Q
    ||||||||  |||||||||||||||| |||||| ||   |||||||| | ||  | ||||| |||||||  | || |||||||| ||||||||||||||     
T  13731 aaagttgtactgtggtttggtgagggacaaaaatttcagtttttgtcctatcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaac 13632  T
Q  101 actaaacaacttaagttatcatgtcctgtcctt 133  Q
    |||  ||||||  |||| |  ||||||||||||    
T  13631 actggacaactggagttgttctgtcctgtcctt 13599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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